Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0195
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        34   0.013
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.36 
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    27   1.5  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   3.4  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   3.4  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    26   3.4  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   4.5  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   4.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   5.9  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   5.9  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    25   7.8  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   7.8  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +1

Query: 379  DKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEPDFLKTN 504
            D +G+ KD+V  E  N+DS EE  N  LD+E +D P+ L  +
Sbjct: 3959 DMNGVTKDSVVSENENSDSEEE--NQDLDEEVNDIPEDLSNS 3998


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 323 NFAGLSLFTKAWICGYAGNLHVQLLIWLERI 231
           NFA + +F   W  G  GNL V   I+LE +
Sbjct: 170 NFASICVFDALWSFGVGGNLPVDSAIFLEAL 200


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/74 (22%), Positives = 37/74 (50%)
 Frame = -3

Query: 404 VSFTMPSLSSSLIIGSKPRTYLI*RLGNFAGLSLFTKAWICGYAGNLHVQLLIWLERISF 225
           +S  + +L +S  I  +  +Y++ R+     L +F   W+      L+++L++++   + 
Sbjct: 669 LSAIIDALKTSRQIFHRMYSYVVYRIALSLHLEIFLGLWLIIRNQLLNLELVVFIAIFAD 728

Query: 224 LLKLIHLNDNTPYS 183
           +  L    DN PYS
Sbjct: 729 VATLAIAYDNAPYS 742


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 328 NLQIKYVRGLDPIIKLL-DKDGIVKDTVAI 414
           N++  +V  +DPI++LL D D  V+ T AI
Sbjct: 115 NIKNFWVAAMDPIVRLLDDTDPYVRKTAAI 144


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 56  TYDGAVAEFSTEDCASLGFIKANLLCSSC 142
           TYD ++A+    D ++L   KAN LC+ C
Sbjct: 405 TYDSSLAD-DHSDTSNLSKDKANTLCAQC 432


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/74 (21%), Positives = 36/74 (48%)
 Frame = -3

Query: 404 VSFTMPSLSSSLIIGSKPRTYLI*RLGNFAGLSLFTKAWICGYAGNLHVQLLIWLERISF 225
           +S  + +L +S  I  +   Y++ R+     L +F   W+      L+++L++++   + 
Sbjct: 757 LSAIIDALKTSRQIFHRMYAYVVYRIALSLHLEIFLGLWLIIRNQLLNLELIVFIAIFAD 816

Query: 224 LLKLIHLNDNTPYS 183
           +  L    DN PY+
Sbjct: 817 VATLAIAYDNAPYA 830


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 71  VAEFSTEDCA-SLGFIKANLL-CSSCDQLKDFSLEQLIDHCKECCHSD 208
           V  +S + C  S+G++K  L  C +C +    SL  +   C   CH+D
Sbjct: 27  VLPYSFDTCTYSMGYLKQPLYACLTCQKASG-SLNAVCYSCSISCHAD 73


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 89  EDCASLGFIKANLLCSSCDQLK 154
           EDC  LG I+ ++ C SC + K
Sbjct: 494 EDCVLLGEIRCHIGCLSCTKCK 515


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 131 CSSCDQLKDF-SLEQLIDHCKECCHSDESASKE 226
           C +C     F ++E+++ H KEC + DE+   +
Sbjct: 21  CFTCQCGTQFDNVERIVQHFKECRYRDETCKDD 53


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 131 CSSCDQLKDF-SLEQLIDHCKECCHSDESASKE 226
           C +C     F ++E+++ H KEC + DE+   +
Sbjct: 21  CFTCQCGTQFDNVERIVQHFKECRYRDETCKDD 53


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 167 EQLIDHCKECCHSDESASKEKKYARAILEAVHANFQ 274
           E+L+D   +C  + +   KEKKY    LE + A++Q
Sbjct: 168 EELLDIYAQCHDAQDIQEKEKKY----LEEMEASYQ 199


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = +2

Query: 44  PVLVTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLIDHCKECCHSDESASK 223
           P L++ D +V+   +   ASL    +N+L    DQ     L++L++  K   H D   ++
Sbjct: 321 PSLISDDPSVSSSLSSSVASLSLQNSNILSFCKDQHGCRYLQRLLEK-KNQSHIDAVFAE 379

Query: 224 EKKYARAILEAVHANF 271
              Y   ++     N+
Sbjct: 380 THPYLAVLMVDAFGNY 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,037
Number of Sequences: 5004
Number of extensions: 44390
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)