Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0195
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861...    51   7e-07
07_03_0590 + 19786960-19787136,19787198-19787272,19787676-197881...    29   3.4  
01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897     28   4.6  
12_02_0272 - 16634765-16635004,16635412-16635457,16636107-166380...    27   8.0  
05_01_0328 - 2571155-2571627,2571894-2572197                           27   8.0  
02_05_1088 - 34004961-34005059,34005607-34005651,34005827-34006165     27   8.0  
02_05_1087 - 34001290-34001316,34001513-34001557,34001733-34002071     27   8.0  

>01_06_1645 +
           38884606-38884777,38885509-38885567,38885933-38886114,
           38886559-38886634
          Length = 162

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 23/68 (33%), Positives = 38/68 (55%)
 Frame = +1

Query: 247 IRSCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGIVKDTVAIEKWN 426
           I  C  K   YP+I  F++ D+   FP ++ +YV G  P + +LD  G  K+T+ I+ W 
Sbjct: 85  IEVCMRKLVFYPEIVGFLEEDKD-DFPYVEARYVYGSPPKLIMLDDKGDQKETIRIDNWK 143

Query: 427 TDSVEEFL 450
            + + +FL
Sbjct: 144 REHIRQFL 151



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
 Frame = +2

Query: 80  FSTEDCASLGFIKANLLCSSCDQLKDFSLEQ-LIDHCKECC--HSDESASKEKKYARAIL 250
           F   +C  LGF     LCS C+ L +F  +Q L++ C++CC   SD+S SK   ++ AI+
Sbjct: 28  FGARECEELGFTGL-ALCSDCNALAEFVKDQELVEDCRKCCTEDSDDSISK-LTFSGAII 85

Query: 251 E 253
           E
Sbjct: 86  E 86


>07_03_0590 +
           19786960-19787136,19787198-19787272,19787676-19788173,
           19788605-19788970,19788995-19789009
          Length = 376

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +1

Query: 319 KFPNLQIKYVRGLD--PIIKLLDKDGI-VKDTVAIEKWNTDSVEEFL-NTHLDKEHDDEP 486
           + P  + +   GLD   I K +D+  I +  T+A +    D   E++ +T LDK  + EP
Sbjct: 40  RHPPPRFELAEGLDYKKIDKFMDERAISIAKTIANDIIIPDPAPEWMCHTFLDKHDELEP 99

Query: 487 DFLKTNPI*CF 519
            F+K +P  CF
Sbjct: 100 IFVKDSPR-CF 109


>01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897
          Length = 553

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 446 NSSTESVFHFSMATVSFTMPSLSSSL 369
           N+ T  V  F+ ATV FT+PS+++ L
Sbjct: 296 NADTPGVSTFNTATVGFTLPSVTTRL 321


>12_02_0272 -
           16634765-16635004,16635412-16635457,16636107-16638098,
           16639478-16640286
          Length = 1028

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 421 WNTDSVEEFLNTHLDKEHDDEPDFLKTNPI*C 516
           W T+S+ ++L+ HLD       D    N + C
Sbjct: 725 WPTESILDYLSQHLDTPASSHSDLFSPNLVAC 756


>05_01_0328 - 2571155-2571627,2571894-2572197
          Length = 258

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = +2

Query: 152 KDFSLEQLIDHCKECCHSDESASKEKKYARA 244
           K + +  + DHC++    D++ +K+++Y+ A
Sbjct: 133 KLYQIVVICDHCEDSFRQDKAVNKQRRYSEA 163


>02_05_1088 - 34004961-34005059,34005607-34005651,34005827-34006165
          Length = 160

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +2

Query: 74  AEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLIDHCKECCHS--DESASKEKKYARA 244
           A    + C    FIK   +  +   +KD   ++ ID C   C++   E  +  KK A +
Sbjct: 46  APIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAES 104


>02_05_1087 - 34001290-34001316,34001513-34001557,34001733-34002071
          Length = 136

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +2

Query: 74  AEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLIDHCKECCHS--DESASKEKKYARA 244
           A    + C    FIK   +  +   +KD   ++ ID C   C++   E  +  KK A +
Sbjct: 46  APIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAES 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,724,562
Number of Sequences: 37544
Number of extensions: 239316
Number of successful extensions: 697
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)