Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0195
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   5e-08
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)                   28   4.7  
SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_53480| Best HMM Match : Sigma70_r1_1 (HMM E-Value=5.7)              28   6.2  
SB_52606| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_57900| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_1577| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.2  

>SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = +2

Query: 74  AEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLIDHCKECCHSDESASKEKKYAR 241
           ++ + E C  LG + +NLLC SCD+LK F +++++ +C  CCH +       K+ R
Sbjct: 23  SKLTPEQCRELG-LSSNLLCGSCDELKQFKMDEIVKNCWLCCHEEGDGQDAAKFVR 77



 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 23/37 (62%), Positives = 31/37 (83%)
 Frame = +1

Query: 340 KYVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFL 450
           K+VRG DPI+KL   DG +K+ ++IEKW+TD+VEEFL
Sbjct: 74  KFVRGSDPILKLHGDDGGIKEELSIEKWDTDNVEEFL 110


>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
          Length = 1277

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 334  QIKYVRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTH 459
            +IKY  G DP+++L D +G    TV + +     +   + +H
Sbjct: 1185 KIKYNPGHDPVMRLYDDNGKEVKTVDVAEMGRQDIVNLVESH 1226


>SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 326 GNFAGLSLFTKA-WICGYAGNLHVQLLIWL 240
           G   G  +F  A W+  Y+G++ + LLIWL
Sbjct: 275 GAMVGSGIFISAQWVLVYSGSVGMSLLIWL 304


>SB_53480| Best HMM Match : Sigma70_r1_1 (HMM E-Value=5.7)
          Length = 402

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 83  STEDCASLGFIK-ANLLCSSCDQLKDFSLEQLIDHCKECCHSDESASKEKKYARA 244
           +T   A LG I+   ++ S    L   +L  +ID+ KEC  + ESA K +   RA
Sbjct: 327 TTVSFAHLGSIQNLAVVASIIVNLSAINLWTVIDNAKECSENAESALKARDQMRA 381


>SB_52606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 326 GNFAGLSLFTKA-WICGYAGNLHVQLLIWL 240
           G   G  +F  A W+  Y+G++ + LLIWL
Sbjct: 40  GVMVGSGIFISAQWVLVYSGSVGMSLLIWL 69


>SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 880

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +2

Query: 107 GFIKANLLCSSCDQ-----LKDFSLEQLIDHCKECCH 202
           GFI+  +LCSSC+      + D   E++  +CK C H
Sbjct: 92  GFIERFVLCSSCENPETVLVVDTRKERIGQNCKACGH 128


>SB_57900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 277 YPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGI 393
           +P  Q   K  R  +FP  +++ +  LDP ++L +K+ +
Sbjct: 20  HPATQEEEKPSRMTQFPQTRVRNMMKLDPDLQLANKEAV 58


>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 140 CDQLKDFSLEQLIDHCKECCHSDESASKEKKYARAIL 250
           C   + F+LEQ + +    CH+ E  +K +   R IL
Sbjct: 3   CRIQRGFALEQPVPYNSHSCHAMEKDNKTRNMGRVIL 39


>SB_1577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 143 DQLKDFSLEQLIDHCKECCHSDESASKEKKYARAILEA 256
           D L+   L+ L   C E CH    +++E +  +++L A
Sbjct: 85  DSLEVTGLQNLYTRCGEACHKFPPSTRESEPLKSVLSA 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,310,510
Number of Sequences: 59808
Number of extensions: 307456
Number of successful extensions: 719
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)