Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0195
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05720.1 68414.m00596 selenoprotein family protein contains P...    48   4e-06
At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family pr...    31   0.54 
At3g63000.1 68416.m07077 NPL4 family protein contains Pfam domai...    29   2.2  
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ...    28   3.8  
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    27   6.7  
At5g53440.1 68418.m06641 expressed protein                             27   8.8  
At4g30850.2 68417.m04378 expressed protein contains Pfam domain,...    27   8.8  
At4g30850.1 68417.m04377 expressed protein contains Pfam domain,...    27   8.8  
At3g48400.1 68416.m05283 DC1 domain-containing protein similar t...    27   8.8  
At2g47970.1 68415.m06002 NPL4 family protein contains Pfam domai...    27   8.8  

>At1g05720.1 68414.m00596 selenoprotein family protein contains
           Prosite PS00190: Cytochrome c family heme-binding site
           signature; similar to 15 kDa selenoprotein (GI:12314088)
           {Homo sapiens}
          Length = 163

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 18/65 (27%), Positives = 41/65 (63%)
 Frame = +1

Query: 256 CTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGIVKDTVAIEKWNTDS 435
           C  K   YP+I  F++ ++  KFP+++++Y+    P + +LD+DG  K+++ I+ W  + 
Sbjct: 90  CMRKLVFYPEIVGFIEEEKE-KFPSVKVQYIFNSPPKLIMLDEDGEHKESIRIDNWKREH 148

Query: 436 VEEFL 450
           + +++
Sbjct: 149 LLQYM 153



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 47  VLVTYDGAVAEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQ-LIDHCKECCHSDESASK 223
           +L +   A  + ST++C  LGF     LCS C  L ++  +Q L+  C +CC  D   S 
Sbjct: 19  ILASTISAKEQLSTKECEDLGF-SGLALCSDCHSLSEYVKDQELVSDCLKCCADDSEDSM 77

Query: 224 EK-KYARAILE 253
            K  Y+ AILE
Sbjct: 78  SKVTYSGAILE 88


>At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 379

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 346 VRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEH 474
           +R + P +  +DK  I+ DT+A        V E  NTH +++H
Sbjct: 243 LRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHHEQQH 285


>At3g63000.1 68416.m07077 NPL4 family protein contains Pfam domain,
           PF05021: NPL4 family
          Length = 413

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 364 IIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLDK 468
           ++K+LD  G +  T  IE  NT +    L TH+++
Sbjct: 322 LVKILDHQGPLSCTFPIENRNTQTTMRALKTHMER 356


>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 843

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +1

Query: 310 RPAKFPNLQIKYVRGLDPIIKL-LDKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEP 486
           RP +  +L+    R  D IIKL L    +  D ++ E+ N   V++FL+ ++++  DD  
Sbjct: 164 RPPRLTHLETSITRHKDHIIKLELILRLLDNDELSPEQVN--DVKDFLDDYVERNQDDFD 221

Query: 487 DF 492
           +F
Sbjct: 222 EF 223


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1234

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 140  CDQLKDFSLEQLIDHCKECCHSDESASKEKKYARAILEAVHANFQR 277
            C++  D  L    DH +EC  +D    +  K  R     VH +F R
Sbjct: 1182 CEENDDNDLVLETDHNEECQDNDVEKKRSSKRMRVNFYIVHNSFPR 1227


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 382 KDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEP 486
           KDG  K   + +K+  D  EE +    DK+ DD P
Sbjct: 228 KDGKHKGEKSRDKYREDKEEEDIKQKGDKQRDDRP 262


>At4g30850.2 68417.m04378 expressed protein contains Pfam domain,
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 358

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 466 YRDEYSKILLLNQCSIFRWLRYLLQCHPY 380
           +R +Y+ I L+  CS F  + Y   CH Y
Sbjct: 194 WRLDYAGISLMIVCSFFAPIYYAFSCHTY 222


>At4g30850.1 68417.m04377 expressed protein contains Pfam domain,
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 358

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 466 YRDEYSKILLLNQCSIFRWLRYLLQCHPY 380
           +R +Y+ I L+  CS F  + Y   CH Y
Sbjct: 194 WRLDYAGISLMIVCSFFAPIYYAFSCHTY 222


>At3g48400.1 68416.m05283 DC1 domain-containing protein similar to
           UV-B light insensitive ULI3 [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 619

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
 Frame = +2

Query: 125 LLCSSCDQLKDF---SLEQLIDHCKE-----CCHSDESASKEKKY 235
           L C +CD   DF   +L + + HC +      CH ++   K+ KY
Sbjct: 517 LCCDTCDFDLDFYCANLPKTVKHCYDEHPLSLCHGEDDVIKDNKY 561


>At2g47970.1 68415.m06002 NPL4 family protein contains Pfam domain,
           PF05021: NPL4 family
          Length = 413

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 364 IIKLLDKDGIVKDTVAIEKWNTDSVEEFLNTHLDK 468
           ++++LD  G +  T  IE  ++ +    L THLD+
Sbjct: 322 LVRILDHQGPLSSTFPIENRSSRATMRALKTHLDR 356


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,867,941
Number of Sequences: 28952
Number of extensions: 213444
Number of successful extensions: 610
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)