Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0193
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    27   2.5  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   3.3  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    26   4.4  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.6  

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -1

Query: 404 FDYSSTGSRLAGSSTDSSFMIVSFPLITNGSSKYGKKYLIINEAIFTNLHASGLEHG 234
           FDYSST +R   SST      + F L + G +     Y +++ A F  L   G E G
Sbjct: 142 FDYSSTTARRTNSST------IGF-LASYGDNTTVLGYNMVDNAYFAGLTLPGFEFG 191


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +3

Query: 477 TVFYRCMKSGRESILFLG---SNVGLEPSTTYTR 569
           T   R M+     ++FLG   SNVG EP T  TR
Sbjct: 841 TELARIMRESPRPLVFLGYVVSNVGQEPQTILTR 874


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 78  FLFFYLFLQRGLFAGASRYKK 16
           F+F YL + RGL+ G+ +Y +
Sbjct: 90  FIFLYLHIGRGLYYGSYKYPR 110


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 438 CSSDGFKADPHDCTVFYRCMKSGRESILFLGSNVGLEPSTTYTR 569
           CSS G    P    +      S  + ILFLG+N+    + T++R
Sbjct: 537 CSSIGLTVSPTKTKI----TNSYTDKILFLGTNISHSKNVTFSR 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,723
Number of Sequences: 5004
Number of extensions: 65998
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)