Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0193
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925...    29   3.4  
12_01_0624 - 5137096-5137310,5137923-5138380,5138428-5140070,514...    28   6.0  
12_01_0613 + 5060150-5060320,5062255-5062359,5064057-5064143,506...    28   6.0  
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550...    28   7.9  
05_04_0393 - 20895485-20895645,20895750-20896358,20896541-208966...    28   7.9  
04_04_0632 + 26738969-26739350,26739535-26739543,26739674-267405...    28   7.9  

>02_05_0752 +
           31491462-31491921,31492177-31492271,31492346-31492573,
           31493070-31493157,31493275-31493326,31493985-31494050,
           31494382-31494536,31494633-31494703,31494820-31495017,
           31495103-31495144,31496223-31496324,31496514-31496603,
           31496708-31496783,31497299-31497395,31497488-31497557,
           31497676-31497852,31498156-31498239,31498971-31499093,
           31500143-31500226,31500318-31500502,31500592-31500730,
           31500841-31500900,31500969-31501040,31501136-31501197,
           31501839-31501945,31501984-31502058,31502800-31503248
          Length = 1168

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 600 PFCTTWVVHPPEYMS*MVPGPHWNLKIVYFPFLISYTCKTQCS 472
           PF T       E+M  +VP    NL    FP+ + Y  +T CS
Sbjct: 107 PFLTRRERFRNEFMRRVVPWEKGNLTWQNFPYYVKYDARTTCS 149


>12_01_0624 -
           5137096-5137310,5137923-5138380,5138428-5140070,
           5140245-5140462,5140589-5140757,5141249-5141305
          Length = 919

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 186 HFKL---DFCIRFTNLNLSTI*AK*SSNFKTSLEIRNLKFLFFYLFLQRGLFAGASRYK 19
           H KL   D C +F+NL + +I     + F +  +++NL+ L+F     R L  G  + K
Sbjct: 361 HIKLKANDLCSKFSNLRVLSIVYAQLATFDSLCQLKNLRHLYFSRTDIRSLPDGIGKMK 419


>12_01_0613 +
           5060150-5060320,5062255-5062359,5064057-5064143,
           5064265-5064318,5064402-5064547,5064651-5064804,
           5064891-5065028,5065454-5065527,5065615-5065756,
           5066396-5066474,5067326-5067423
          Length = 415

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = -2

Query: 640 FSTEGTLRPPHLGTV-LYYVGGTSPRVYVVDGSRPTLEPKNSILSLPDFIHL*NTVQSCG 464
           F+  G L+    G +   ++  T PR++++DG    L P N+   L D+    +T  S G
Sbjct: 207 FALAGLLQEKSWGRLGPQWIRPTPPRLHILDGELQWLNPDNNHELLWDYSMCADT--SRG 264

Query: 463 SALKPSLEHMIGSRLAP 413
           +A++  +   +   LAP
Sbjct: 265 AAIRDLIARALKGPLAP 281


>12_02_0642 +
           21454142-21454251,21454683-21454872,21454988-21455069,
           21455224-21455802,21455854-21456909,21457133-21457251,
           21457369-21457812
          Length = 859

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 532 EPKNSILSLPDFIHL*NTVQSCGSALK-PSLEHMIGSRL 419
           E +N  L+LP F H+   +   G +LK PS   M GS L
Sbjct: 315 ERRNRTLTLPSFAHMLEAIGQFGRSLKGPSPYEMSGSFL 353


>05_04_0393 -
           20895485-20895645,20895750-20896358,20896541-20896616,
           20896729-20896920,20897118-20897438,20897880-20898119,
           20898205-20898522,20898621-20898678,20898778-20898936,
           20900090-20900308,20900400-20900614
          Length = 855

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 610 HLGTVLYYVGGTSPRVYVVDGSRPTLEPKNSILSLPDFI 494
           +LG   Y +G  +    VV+G+R T+E +NSI +  +F+
Sbjct: 298 NLGLTAYLIGNMTN--LVVEGTRRTMEFRNSIRAASNFV 334


>04_04_0632 +
           26738969-26739350,26739535-26739543,26739674-26740545,
           26743048-26743098,26743966-26744127,26744278-26744519,
           26744772-26744859,26744964-26745158
          Length = 666

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 390 GRIVKLYSGARREPIICSSDGFKADPHD 473
           GRIV LY+GA  E +   +    ADP+D
Sbjct: 197 GRIVMLYTGATEESVQVQNLAEPADPND 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,293,195
Number of Sequences: 37544
Number of extensions: 427428
Number of successful extensions: 873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)