Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0193
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29287| Best HMM Match : Homeobox (HMM E-Value=1.4e-25) 32 0.49
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46) 30 2.0
SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43) 29 3.5
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 28 6.0
SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_29287| Best HMM Match : Homeobox (HMM E-Value=1.4e-25)
Length = 207
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 407 QFDYSSTGSRLAGSSTDSSFMIVSFPLITNGSSKYGKKYLIINEAIFTNLHASGLEHGFL 228
+ DYS G + T S +P +G +K K A+F+NL GLE F
Sbjct: 92 KLDYSVYGDMYSTYETQPSSSTSQYPQSPSGQTKTRKARRPWTRAVFSNLQRKGLEKRFQ 151
Query: 227 IE 222
++
Sbjct: 152 VQ 153
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 444 SDGFKADPHDCTVFYRCMKSGR 509
+DG ADP DC+ +Y+C K GR
Sbjct: 232 TDGTYADPKDCSAYYQC-KKGR 252
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 405 LYSGARREPIICSSDGFKADPHDCTVFYRCMKSGRESIL 521
L R P + G+ ADP DC FY C S ES+L
Sbjct: 559 LSRSVRHVPRLGKPRGYYADPKDCAQFYFCYGSA-ESLL 596
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 447 DGFKADPHDCTVFYRC 494
+G+ ADP DC+ FY+C
Sbjct: 788 NGYYADPRDCSRFYQC 803
>SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46)
Length = 911
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 344 VHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSG 380
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 354 VHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSG 390
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 364 VHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSG 400
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 374 VHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSG 410
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 384 VHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSG 420
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 394 VHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSG 430
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 404 VHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSG 440
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 414 VHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSG 450
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 424 VHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSG 460
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 434 VHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSG 470
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 264 VHKSQSGEGTVHKSQSGKGTVHKSQSGEGTVHKRQSG 300
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + GK T+ + Q G GT++ SG T H ++G
Sbjct: 274 VHKSQSGKGTVHKSQSGEGTVHKRQSGEGTVHKSRSG 310
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 284 VHKSQSGEGTVHKRQSGEGTVHKSRSGEGTVHKSQSG 320
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 324 VHKSQSGEGTVRKSQSGEGTVHKSQSGEGTVHKSQSG 360
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ R G+ T+ + Q G GT++ SG T Q+G
Sbjct: 304 VHKSRSGEGTVHKSQSGEGTVHKSQSGEGTVRKSQSG 340
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + Q G GT+ SG T H Q+G
Sbjct: 314 VHKSQSGEGTVHKSQSGEGTVRKSQSGEGTVHKSQSG 350
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V + + G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 334 VRKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSG 370
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 503 RKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
+ G+ T+ + Q G GT++ SG T H Q+G
Sbjct: 258 QSGEGTVHKSQSGEGTVHKSQSGKGTVHKSQSG 290
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 491 VYEIRKGKYTIFRFQCGPGTIYDIYSGGCTTHVVQNG 601
V++ + G+ T+ + + G GT++ SG T H Q+G
Sbjct: 294 VHKRQSGEGTVHKSRSGEGTVHKSQSGEGTVHKSQSG 330
>SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43)
Length = 456
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 619 RPPHLGTVLYYVGGTSPRVYVVDGSRPTLEPKNSILSLPDF 497
R H G VL VY++DG R T+E + +SL DF
Sbjct: 161 RDLHWGNVLIARKAEKQLVYMLDGERWTVESRGLCVSLIDF 201
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 567 EYMS*MVPGPHWNLKIVYFPFLISYTC 487
+Y+S + PG + K YFPF+ SY C
Sbjct: 134 QYISTVFPGQYGIPKPFYFPFMKSYWC 160
>SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 545 GTIYDIYS-GGCTTHVVQNGPEVWGP*C 625
G IY +Y TT+ GP+ WGP C
Sbjct: 497 GQIYSLYKRNNGTTYFSMLGPQEWGPSC 524
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,053,577
Number of Sequences: 59808
Number of extensions: 484383
Number of successful extensions: 970
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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