Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0193
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    31   1.00 
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    28   5.3  
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF106584-1|AAC78221.1|  360|Caenorhabditis elegans Hypothetical ...    27   9.3  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    27   9.3  
AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical ...    27   9.3  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    27   9.3  

>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
            H02I12.1 protein.
          Length = 1319

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 438  CSSDG-FKADPHDCTVFYRCMKSGRESILFLGSNVGLEPSTTYTRGDVPPT*YKTVPRCG 614
            CS  G F AD ++C VFYRC+  GR+ ++   S     P  +    D P      VP C 
Sbjct: 1245 CSEHGSFIADANNCEVFYRCV-WGRKVVMTCPSGTVFNPLLSVC--DWP----SAVPSCS 1297

Query: 615  G 617
            G
Sbjct: 1298 G 1298


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 438 CSSDGFKADPHDCTVFYRCM 497
           C+ DGF   P DC  F RC+
Sbjct: 566 CTKDGFFGVPSDCLKFIRCV 585


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 632  RGHIKAPTPRDRFVLRGWYIPPSI 561
            RG   +PTP   F+  GW  PP +
Sbjct: 2266 RGEAPSPTPATPFIPPGWVAPPQM 2289


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 632  RGHIKAPTPRDRFVLRGWYIPPSI 561
            RG   +PTP   F+  GW  PP +
Sbjct: 2684 RGEAPSPTPATPFIPPGWVAPPQM 2707


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 579 PPT*YKTVPRCGGLNVPSVEKNDHGIGNF 665
           PPT +KT P+C     P +EKN  G+  F
Sbjct: 363 PPTPWKTCPKCN----PGMEKNKLGVCEF 387


>AF106584-1|AAC78221.1|  360|Caenorhabditis elegans Hypothetical
           protein F54A5.2 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 156 TNLNLSTI*AK*SSNFKTSLEIRNLKFLFFYLFLQRGLF 40
           T+   S++    S+N  +S    NL FLFF L +  G+F
Sbjct: 320 TSQTTSSVSTDSSTNSSSSSSSANLSFLFFLLIVASGVF 358


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
            repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 559  VVDGSRPTLEPKNSILSLPDFIHL*NTVQSCGSALKPSLEHMIGSRLAPEY 407
            ++DG+RP L P   +L  P  + L     S     +PS   ++G   APE+
Sbjct: 1945 MLDGARPVLLPHELLLPTP-MLDLLVHCWSAHPESRPSSSQLVGFCAAPEF 1994


>AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical
           protein W03F11.1 protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 408 YSGARREPIICSSDGFKADPHDCTVFYRC 494
           Y GA +E      DG+K D ++C  FY+C
Sbjct: 152 YYGACKES--AGHDGYKPDVYNCKNFYQC 178


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
            kinase protein.
          Length = 2393

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 559  VVDGSRPTLEPKNSILSLPDFIHL*NTVQSCGSALKPSLEHMIGSRLAPEY 407
            ++DG+RP L P   +L  P  + L     S     +PS   ++G   APE+
Sbjct: 1943 MLDGARPVLLPHELLLPTP-MLDLLVHCWSAHPESRPSSSQLVGFCAAPEF 1992


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,678,183
Number of Sequences: 27780
Number of extensions: 373373
Number of successful extensions: 750
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)