Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0193
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12060.1 68417.m01918 Clp amino terminal domain-containing pr...    33   0.23 
At3g57030.1 68416.m06348 strictosidine synthase family protein s...    31   0.70 
At4g33900.1 68417.m04810 kelch repeat-containing F-box family pr...    29   2.8  
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT...    28   6.5  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    28   6.5  

>At4g12060.1 68417.m01918 Clp amino terminal domain-containing
           protein contains Pfam profile: PF02861 Clp amino
           terminal domain
          Length = 241

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 22/54 (40%), Positives = 28/54 (51%)
 Frame = -2

Query: 664 KFPIP*SFFSTEGTLRPPHLGTVLYYVGGTSPRVYVVDGSRPTLEPKNSILSLP 503
           K  +P  FFST   L  P LG V   +  TSP V  +  +RP    K++I SLP
Sbjct: 26  KLSVPLYFFSTRKALTNPWLGVVDSSLSLTSP-VSALQTNRPRRIHKSAISSLP 78


>At3g57030.1 68416.m06348 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]
          Length = 374

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -2

Query: 601 TVLYYVGGTSPRVYVVDGSRPTLEPKNSILSLPDFIHL*NTVQSCGSALKPSLEHMIGSR 422
           ++ +   G  P V V DG    L+ +   L   DF H  +  Q C     P LEH+ G  
Sbjct: 59  SIAFDPAGEGPYVGVSDGR--ILKWRGEPLGWSDFAHTSSNRQECARPFAPELEHVCGRP 116

Query: 421 LAPEYN 404
           L   ++
Sbjct: 117 LGLRFD 122


>At4g33900.1 68417.m04810 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 379

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +3

Query: 402 KLYSGARREPIICSSDGFKADPHDC----TVFYRC 494
           K++ G  R   IC + G+  DP  C     VFYRC
Sbjct: 239 KMHKGKWRGADICLNHGWSLDPSSCCVIENVFYRC 273


>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3)
           identical to potassium channel [Arabidopsis thaliana]
           gi|1100898|gb|AAA97865; Note: also identical to AKT3
           [Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
           a truncated version of AKT2, PMID:10852932; member of
           the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
           channel family, PMID:11500563; identical to cDNA
           inward-rectifying K+ channel (AKT3) GI:1172219
          Length = 802

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -2

Query: 610 HLGTVLYYVGGTSPRVYVVDGSRPTLEPKNSILSLPDFIH 491
           +LG   Y +G  +    VV+G+R T+E +NSI +  +F++
Sbjct: 301 NLGLTAYLIGNMTN--LVVEGTRRTMEFRNSIEAASNFVN 338


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
           binding domain-containing protein contains Pfam profiles
           PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
           binding domain
          Length = 2176

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 406 CTQGLDENQSYAPVMVLRLIH 468
           CT G D++  Y PV V+R IH
Sbjct: 44  CTAGQDDDGEYEPVEVVRSIH 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,641,358
Number of Sequences: 28952
Number of extensions: 346528
Number of successful extensions: 681
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)