Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0192
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    86   3e-18
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    86   3e-18
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    37   0.003
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    27   2.1  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    26   4.8  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   6.4  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   6.4  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   8.5  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   8.5  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    25   8.5  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 86.2 bits (204), Expect = 3e-18
 Identities = 39/46 (84%), Positives = 42/46 (91%)
 Frame = -2

Query: 392 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHI 255
           G  +EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN +
Sbjct: 49  GIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFV 94



 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = -1

Query: 252 ENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 109
           ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 96  ENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 86.2 bits (204), Expect = 3e-18
 Identities = 39/46 (84%), Positives = 42/46 (91%)
 Frame = -2

Query: 392 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHI 255
           G  +EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN +
Sbjct: 49  GIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFV 94



 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = -1

Query: 252 ENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 109
           ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 96  ENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = -2

Query: 368 VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 270
           V+ K+PNSA+RK  RV+L   G+ VTA++P  G
Sbjct: 61  VKPKKPNSAVRKVARVRL-STGRSVTAYIPGIG 92


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 959

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 238  YFVVFLMWFRQPSRG-TNAVTFFPFLMSCTRTHLRMAELGCLASTP 372
            Y   FL+W ++PS+   NA  F  F+    +  L+  +    AS+P
Sbjct: 901  YLKSFLLWIQEPSKSHYNANIFHDFINWGAQQRLKHQQTSTAASSP 946


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 16  HNIYYVLGFYIL*TYKQRASRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTN--S 189
           HN  Y++  Y   T K++  R  +++HN     W+ L  F+      + YFY   ++  S
Sbjct: 179 HNNPYIIRGYRFYTSKRKCFRSILSWHNETFNIWTHLSAFIVF-FAVLAYFYPSSSSWVS 237

Query: 190 GNVTDGV 210
            NV++ +
Sbjct: 238 SNVSNRI 244


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 175 LKTNSGNVTDGVTFTTESRH*YFVVFLMWFRQPSR 279
           +K  +  VTD     T+S H Y VV  M FR+  R
Sbjct: 670 IKALTSTVTDSTLVDTQSFHPYKVVTDMIFREDRR 704


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 112 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 234
           SW L+++ V S+E+  GY   L     N+ D  G+    ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 2   FFLLYTIFIMY*DFTFYELINNALPDSRSLITMYTY 109
           FFL +TI +++    F      ++P +  LIT+  Y
Sbjct: 199 FFLSFTILLVFTSPEFANTFIRSIPSNEGLITLSGY 234


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 353 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIKKTTKY 237
           P +A   C+    IK    +T+ +PR+  +NH ++  +Y
Sbjct: 32  PPNAAAMCM--DCIKMTTDITSGIPRESTVNHCRECERY 68


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 575 QAAQLLGRAIGAGLFAITPAGERGCAARRLSWVTPGF 465
           Q+ + +GR   +GL   +  G +G   RR   + PGF
Sbjct: 12  QSKKRVGRGPASGLGKTSGRGHKGSGQRRGRRIKPGF 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,993
Number of Sequences: 5004
Number of extensions: 56130
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)