Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0192
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 95 4e-20
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 95 4e-20
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 82 3e-16
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 6e-07
09_02_0036 + 3217163-3217584,3217752-3218322 30 1.2
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 29 3.8
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 29 3.8
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 28 6.6
10_02_0183 + 6365523-6366245 28 6.6
12_02_0653 + 21545862-21546584,21546661-21546696,21547182-215474... 27 8.7
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 8.7
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 8.7
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 95.1 bits (226), Expect = 4e-20
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = -1
Query: 255 QENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 109
+ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 94 EENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 83.8 bits (198), Expect = 9e-17
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = -2
Query: 392 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIKK 249
G LEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN I++
Sbjct: 48 GIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEE 95
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 95.1 bits (226), Expect = 4e-20
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = -1
Query: 255 QENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 109
+ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 264 EENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 91.5 bits (217), Expect = 5e-19
Identities = 41/47 (87%), Positives = 46/47 (97%)
Frame = -1
Query: 255 QENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 115
+ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 94 EENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
Score = 83.8 bits (198), Expect = 9e-17
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = -2
Query: 392 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIKK 249
G LEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN I++
Sbjct: 48 GIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEE 95
Score = 83.8 bits (198), Expect = 9e-17
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = -2
Query: 392 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIKK 249
G LEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN I++
Sbjct: 218 GIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEE 265
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 82.2 bits (194), Expect = 3e-16
Identities = 36/48 (75%), Positives = 41/48 (85%)
Frame = -2
Query: 392 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIKK 249
G LEK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN IK+
Sbjct: 119 GIVLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKE 166
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -1
Query: 246 DEVLVAGFGRKGHAVGDIPGVRFKVVK 166
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 422 ITIHWPSFYNVV-TGKTLALPNLIALQH 502
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 492 PCSTSPFASWRNSEEARTDRPSQQLRSLNG 581
P PF SW N +A D+ + L LNG
Sbjct: 402 PSRQDPFTSWDNMRQACLDKGTHALGKLNG 431
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 492 PCSTSPFASWRNSEEARTDRPSQQLRSLNG 581
P PF SW N +A D+ + L LNG
Sbjct: 407 PSRQDPFTSWDNMRQACLDKGTHALGKLNG 436
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 3 FFCCTQYLLCTRILHFMNL*TTRFPTAGHLSQCT-PMILVAPFSL 134
+FCC QY + I HF TR + ++ + T M +VA L
Sbjct: 43 YFCCKQYDIILLIAHFYRALRTRMKSVRNIQKITKAMKMVAASKL 87
>10_02_0183 + 6365523-6366245
Length = 240
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 303 KESDRIRPP*RLPKPHQENDEVLVAGF 223
KES R+ PP L PH+ + V +AG+
Sbjct: 187 KESFRLHPPTPLMLPHKASTSVKIAGY 213
>12_02_0653 +
21545862-21546584,21546661-21546696,21547182-21547401,
21547590-21548025,21548103-21548273,21548354-21548636,
21548716-21548829,21549012-21549082,21549417-21549429
Length = 688
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 261 PHQENDEVLVAGFGRKGHAVGDIPGVRFKVVK 166
PH NDE+L G R+ A P R K K
Sbjct: 313 PHPPNDEILTLGAARRQQAAPPPPAKRSKRAK 344
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 434 WPSFYNVV-TGKTLALPNLIALQH 502
W F N+V +G TL+LP + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +3
Query: 78 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 227
T GH+++ P+ L LCR E + ++ P E E H+ DL I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,519,193
Number of Sequences: 37544
Number of extensions: 428248
Number of successful extensions: 1200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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