Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0192
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...    91   4e-19
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    30   1.5  
L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical pr...    28   4.4  
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   5.9  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   5.9  
AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRN...    28   5.9  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 41/49 (83%), Positives = 46/49 (93%)
 Frame = -1

Query: 255 QENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 109
           +ENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKERPRS
Sbjct: 95  EENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143



 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 39/48 (81%), Positives = 44/48 (91%)
 Frame = -2

Query: 392 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIKK 249
           G  LEK+GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +++
Sbjct: 49  GIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEE 96


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 392 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 270
           G  L+ V    K+PNS  RKC  V+L   G +V A++P  G
Sbjct: 78  GIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG 117


>L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK1236.3b protein.
          Length = 810

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 463 ENPGVTQLNRLAAHPLSPAGVIAKRPAPIALP 558
           E  G ++L R    P++PA V+ K   P+ALP
Sbjct: 226 EPAGPSELMRAINAPVAPAPVVIKIETPVALP 257


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 463 ENPGVTQLNRLAAHPLSPAGVIAKRPAPIALP 558
           E  G ++L R    P++PA V+ K   P+ALP
Sbjct: 416 EPAGPSELMRAINAPVAPAPVVIKIETPVALP 447


>Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical
           protein C25A1.7 protein.
          Length = 970

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 308 NGKKVTAFVPRDGCLNHIKKTTK 240
           N KK T F+P    +NHIK T +
Sbjct: 37  NKKKSTVFLPSSSFINHIKSTER 59


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 173 TLKRTPGMSPTA*PLRPNPATSTSS 247
           T  RTP  +P A P RP P+ S+++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 173 TLKRTPGMSPTA*PLRPNPATSTSS 247
           T  RTP  +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


>AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 972

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 308 NGKKVTAFVPRDGCLNHIKKTTK 240
           N KK T F+P    +NHIK T +
Sbjct: 37  NKKKSTVFLPSSSFINHIKSTER 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,084,845
Number of Sequences: 27780
Number of extensions: 335637
Number of successful extensions: 769
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)