Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0192
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    26   0.32 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.99 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.99 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.3  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   7.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.0  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 48  FMNL*TTRFPTAGHLSQCTPMILVAPFSLCRERGETRWL 164
           +++  T  F T+   + C   ++V PFS   E  E RWL
Sbjct: 75  YLHTATNYFVTSLAFADCLVGLVVMPFSAIYEVLENRWL 113



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 598 FTICHSPFRLRNCWEG 551
           F IC  PF + N W G
Sbjct: 344 FIICWLPFFVVNLWSG 359


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 213 GHAVGDIPGVRFKVVKVANVSLL 145
           GH V D+PGVR +V++   + LL
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLL 90


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 213 GHAVGDIPGVRFKVVKVANVSLL 145
           GH V D+PGVR +V++   + LL
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLL 90


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 213 GHAVGDIPGVR 181
           G AVGD+PG+R
Sbjct: 42  GSAVGDVPGLR 52


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 460 SHDVVKRRPVNCNTTHYRANWVPGP 386
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 353 PNSAIRKCV 327
           PNSA+RKC+
Sbjct: 584 PNSAVRKCM 592


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 600 ALQFAIRHSGCATVGKGDRCGPL 532
           A+  AI H+ CA+V K    GP+
Sbjct: 8   AILIAIVHASCASVPKVVYDGPI 30


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 302 KKVTAFVPRDGCLNHIKKTTKY*WRDSV 219
           K  T  +P+D C N +K   ++ +R  +
Sbjct: 71  KHPTIIMPQDVCFNDLKFIIEFVYRGEI 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,840
Number of Sequences: 438
Number of extensions: 4068
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)