Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0191
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    28   1.2  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    27   3.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   3.7  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.8  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   6.4  
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    25   8.5  

>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -3

Query: 598  RIICVDRDFHHLKKLWT----PTKRPFTPTSEWNVASMIGSIVWKNVSI 464
            +  C+D  +H L+K WT     +K  F+P S   +  ++ SI+ K  S+
Sbjct: 890  KFFCIDERYHFLEKQWTLYYSHSKLMFSPFSSQRII-LLYSIINKETSV 937


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 632 ALMISILSLKIKNNLRGQRFSSPE 561
           +L  S +S K+KNNL G  FSS E
Sbjct: 630 SLSSSDISKKLKNNLNGLHFSSDE 653


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 339 DFIRAEDWPSSSPDLNPLDYYLWSVLESRLALN 241
           DF    D P+  PD+     YLW VL + L+L+
Sbjct: 671 DFYAHSDVPAHQPDVWFEPKYLWEVLAADLSLS 703


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -3

Query: 508  VASMIGSIVWKNVSIFAEKTSKNNKYIFK 422
            ++++ G +V  NV I+AE  ++NN +IFK
Sbjct: 1482 ISNVSGFVV--NVEIYAEVKTENNSWIFK 1508


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 98  GLHWLQYSPLNVEASYQYAEDRSTHSFHGKIFHFQSYGLL 217
           G  WL     N++ S Q  ED+    F   IF++ + G L
Sbjct: 502 GTTWLNNVTDNLKISAQTLEDKDNPKFAKNIFYYNADGAL 541


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 569 SPEEAVDAYKTAIYPNFRMECCF 501
           +PE  +  + ++IY +FR+EC F
Sbjct: 736 TPEATLRKWASSIYLSFRLECVF 758


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 519 PNGMLLQ*LVPSYGKMCQFSRRRLRKTINTFLNSN 415
           P+G++L+ L  S G   Q +R  + + ++TF +S+
Sbjct: 149 PSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSS 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,475
Number of Sequences: 5004
Number of extensions: 71982
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)