Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0191
(735 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 60 1e-09
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 39 0.003
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 39 0.003
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 39 0.003
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 39 0.003
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 39 0.003
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 39 0.003
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 39 0.003
U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical pr... 33 0.28
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 33 0.28
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 33 0.28
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 33 0.28
AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 29 4.5
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 28 7.9
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 28 7.9
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 28 7.9
AF022983-4|AAB69944.1| 387|Caenorhabditis elegans Hypothetical ... 28 7.9
>AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical
protein H28G03.4 protein.
Length = 459
Score = 60.5 bits (140), Expect = 1e-09
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = -1
Query: 372 STQSWLETNVSDFIRAEDWPSSSPDLNPLDYYLWSVLESR 253
+ Q+W E+N DFI WP SSPDLNP+DY +WSVLE++
Sbjct: 319 NVQAWCESNFPDFIAFNQWPPSSPDLNPMDYSVWSVLEAK 358
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -1
Query: 321 DWPSSSPDLNPLDYYLWSVLESRL 250
DWPS SPDLNP++ +LW LE RL
Sbjct: 200 DWPSQSPDLNPIE-HLWEELERRL 222
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -1
Query: 321 DWPSSSPDLNPLDYYLWSVLESRL 250
DWPS SPDLNP++ +LW LE RL
Sbjct: 241 DWPSQSPDLNPIE-HLWEELERRL 263
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -1
Query: 321 DWPSSSPDLNPLDYYLWSVLESRL 250
DWPS SPDLNP++ +LW LE RL
Sbjct: 270 DWPSQSPDLNPIE-HLWEELERRL 292
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -1
Query: 321 DWPSSSPDLNPLDYYLWSVLESRL 250
DWPS SPDLNP++ +LW LE RL
Sbjct: 270 DWPSQSPDLNPIE-HLWEKLERRL 292
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -1
Query: 321 DWPSSSPDLNPLDYYLWSVLESRL 250
DWPS SPDLNP++ +LW LE RL
Sbjct: 200 DWPSQSPDLNPIE-HLWEELERRL 222
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -1
Query: 321 DWPSSSPDLNPLDYYLWSVLESRL 250
DWPS SPDLNP++ +LW LE RL
Sbjct: 200 DWPSQSPDLNPIE-HLWEELERRL 222
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -1
Query: 321 DWPSSSPDLNPLDYYLWSVLESRL 250
DWPS SPDLNP++ +LW LE RL
Sbjct: 270 DWPSQSPDLNPIE-HLWEELERRL 292
>U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical
protein K10B3.2 protein.
Length = 141
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1
Query: 321 DWPSSSPDLNPLDYYLWSVL 262
DWP+ SPDLNP++ LW +L
Sbjct: 66 DWPARSPDLNPIE-NLWGIL 84
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1
Query: 321 DWPSSSPDLNPLDYYLWSVL 262
DWP+ SPDLNP++ LW +L
Sbjct: 254 DWPARSPDLNPIE-NLWGIL 272
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1
Query: 321 DWPSSSPDLNPLDYYLWSVL 262
DWP+ SPDLNP++ LW +L
Sbjct: 254 DWPARSPDLNPIE-NLWGIL 272
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1
Query: 321 DWPSSSPDLNPLDYYLWSVL 262
DWP+ SPDLNP++ LW +L
Sbjct: 384 DWPARSPDLNPIE-NLWGIL 402
>AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical
protein Y39A3A.1 protein.
Length = 311
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 315 PSSSPDLNPLDYYLWSVLESRLA 247
P SPDL P DY+L+ L++ LA
Sbjct: 239 PPYSPDLAPTDYHLFRSLQNHLA 261
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 174 LSMGKFFTSNRTDCYRDSKLSWRLEQAYSLKL 269
LSMG FF +N T CY +W L A +L L
Sbjct: 969 LSMG-FFATNTTSCYLRFLSAWFLSYASTLPL 999
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 174 LSMGKFFTSNRTDCYRDSKLSWRLEQAYSLKL 269
LSMG FF +N T CY +W L A +L L
Sbjct: 969 LSMG-FFATNTTSCYLRFLSAWFLSYASTLPL 999
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 174 LSMGKFFTSNRTDCYRDSKLSWRLEQAYSLKL 269
LSMG FF +N T CY +W L A +L L
Sbjct: 969 LSMG-FFATNTTSCYLRFLSAWFLSYASTLPL 999
>AF022983-4|AAB69944.1| 387|Caenorhabditis elegans Hypothetical
protein R13D11.4 protein.
Length = 387
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 491 FHRMEKCVNFRGEDFEKQ*IHF*IVMLCHFVNSRNFQCRLVHSL 360
FHR+ V+F+ +++K + CHF+ R CRL+H L
Sbjct: 144 FHRIFFRVDFQYYEWQK-------LSNCHFLTPRALPCRLIHPL 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,861,752
Number of Sequences: 27780
Number of extensions: 387429
Number of successful extensions: 920
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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