Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0191
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    27   0.24 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.1  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   9.1  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 315 PSSSPDLNPLDYYLWSVLESRL 250
           P  SPDL P DY+L+  L++ L
Sbjct: 270 PPYSPDLAPSDYFLFRSLQNSL 291



 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -1

Query: 645 SPDLSPNDFYTF 610
           SPDL+P+D++ F
Sbjct: 273 SPDLAPSDYFLF 284


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -1

Query: 387 FSVPPSTQSWLETNVSDFIRAEDWPS---SSPDLNPLDYYLWSVLESRLALNAM 235
           F    +T  W+E + ++F +  +W S        N ++ +LW+    R   N M
Sbjct: 33  FGAEANTPGWVEESFTNFDKGINWRSYVVCDVAYNNVNNWLWTPFIERGPANRM 86


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -1

Query: 303 PDLNPLDY-YLWSVLESRLALNAMITWSPYNNPYDWK*KIFP 181
           PD    +Y Y   +L +R  L  +    PY   +DW+   +P
Sbjct: 252 PDYRGEEYLYSHKLLLNRYYLERLSNDLPYLEEFDWQKPFYP 293


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 447 EVFSAKIDTFFHTMEPIIEATFHS 518
           ++   KI  FF  + P+I   FHS
Sbjct: 237 DLVGKKITHFFDLVRPLIAFKFHS 260


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = -3

Query: 202 LEVKNFPMER-----VRTSIFCVLITGLNV 128
           +E++NFPM+R     +  S  C+ +  +N+
Sbjct: 164 MELRNFPMDRQSCPLILGSCKCIYVQSINL 193


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 204 RTDCYRDSKLSW 239
           + DC ++SK+SW
Sbjct: 26  KKDCRKESKVSW 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,207
Number of Sequences: 438
Number of extensions: 5053
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)