Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0191
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72950.1 68414.m08437 disease resistance protein (TIR-NBS cla...    31   0.79 
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ...    31   0.79 
At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si...    29   4.2  
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta...    27   9.8  
At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id...    27   9.8  
At2g24440.1 68415.m02921 expressed protein                             27   9.8  
At1g16750.1 68414.m02011 expressed protein contains Pfam profile...    27   9.8  

>At1g72950.1 68414.m08437 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 379

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -2

Query: 350 RTFRTSSELKTGRRLVPILIRWI 282
           RTF+   ELK GRR+ P LIR I
Sbjct: 40  RTFKDDKELKNGRRITPELIRAI 62


>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
            DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
            [Arabidopsis thaliana]
          Length = 1576

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 540  NGHLPQLPNGMLLQ*LVPSYGKMCQFSRRRLRKTINTFLNSNV 412
            N H P +   ++   L P  G+MC  S+ R R  I T   + V
Sbjct: 912  NAHDPGILRAVIAVGLYPMLGRMCPLSKNRTRSVIETIAGAKV 954


>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein similar
            to alpha-glucosidase II from SP:Q9F234 [Bacillus
            thermoamyloliquefaciens]; contains Pfam profile: PF01055
            Glycosyl hydrolases family 31
          Length = 991

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -1

Query: 420  SNVVSLR*FPKFSVPPSTQSWLETNVSDFIRAEDWPSSSPDL---NPLDYYLWSVLESRL 250
            S +V LR  P F++   T+S++     D  + E WP S   +   N L +  W +++  L
Sbjct: 878  SRLVCLRVHPTFTLLHPTESFVSFTSIDGSKHEVWPDSGDQIYEGNNLPHGKWMLVDKSL 937

Query: 249  AL 244
             L
Sbjct: 938  NL 939


>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
           Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
           DNA repair protein (rad1); almost identical to 5' repair
           endonuclease (GI:8926611) [Arabidopsis thaliana]
          Length = 956

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = -2

Query: 368 HSLGWKRTFRTSSELKTGRRLVPILIRW 285
           H+LG KRT +  S+LKT R+L+  L+R+
Sbjct: 264 HTLG-KRTKQLVSDLKTLRKLLDYLVRY 290


>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
           identical to GI:2347098
          Length = 371

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
 Frame = +2

Query: 65  NNLKYKKLIRSGLHWLQYSPLNVEASYQYA--------EDRSTHSFHGKIFHFQSYG 211
           N+  Y  L++S  HWL +   NVE   + A        ++ S+++ HG I  ++S G
Sbjct: 312 NHGHYVSLVKSHNHWLFFDDENVEMIEESAVQTFFGSSQEYSSNTDHGYILFYESLG 368


>At2g24440.1 68415.m02921 expressed protein
          Length = 183

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 541 KRPFTPTSEWNVASMIGSIVWK 476
           KRPFTP  E N+  +I  IV K
Sbjct: 160 KRPFTPMKELNMEEVIADIVEK 181


>At1g16750.1 68414.m02011 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 529

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 653 PRTAPT*ALMISILSLKIKNNLRGQRFSSPEEAV 552
           P   P  AL++SIL LK+ +  R    S+PE  V
Sbjct: 380 PLHRPQIALLLSILKLKVSDEQRQAGISTPEPLV 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,786,892
Number of Sequences: 28952
Number of extensions: 359807
Number of successful extensions: 764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)