Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0190
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    27   2.6  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    26   4.5  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   4.5  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.5  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   6.0  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   7.9  

>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 131 NLASSCRIEMIL-IDLEIFFFHVEYGYCLSFMTVQSSYFRLVN 6
           +LA   RI ++L ID+  FF  +  GY +  + + +  F ++N
Sbjct: 3   DLARQTRIILLLGIDVTFFFIEIITGYAIDSLALIADSFHMLN 45


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 634 PGLPPHAASTRAPGNCPGVAP 696
           PG  P AA   APG  PG AP
Sbjct: 615 PGGMPGAAPGAAPGAAPGAAP 635



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 601 VLAARGAAVPTPGLPPHAASTRAPGNCPG 687
           +  A GA    PG  P AA   APG  PG
Sbjct: 608 IYQAGGAPGGMPGAAPGAAPGAAPGAAPG 636



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 695 GATPGQFPGARVEAACGGNPG 633
           GA PG  PGA   AA GG+ G
Sbjct: 620 GAAPGAAPGAAPGAAPGGDNG 640


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 617 APRYRHPGYPHTPLRHAHQETAPAWRP 697
           AP+Y +P  P    +  H ET P   P
Sbjct: 81  APKYLYPSSPSKSTKKPHNETEPLLSP 107


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
 Frame = -2

Query: 583 RALPPARDQATGPSDS-----RRSHQLPQNVTITES 491
           R LPPA+  +   S S     RR H+LP N T   S
Sbjct: 263 RGLPPAQKLSPNSSQSQITHNRRKHKLPLNATTNNS 298


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 571 PARDQATGPSDSRRSHQLPQNVTITESGGELLVIACRPADTPA 443
           P  ++AT PS    S ++P N T         +IA     TPA
Sbjct: 527 PRYEEATRPSSPTESVEIPSNTTTIAPSPVPTIIAPALPSTPA 569


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 592 GGRRALPPARDQATGPSDSRRSHQLPQNVT 503
           G R   PP R+QA    DSR+    P N +
Sbjct: 395 GNRAYNPPNRNQAFSARDSRQEKTQPTNAS 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,248
Number of Sequences: 5004
Number of extensions: 54925
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)