Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0190
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 34 0.095
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 30 1.5
05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306 30 1.5
10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496 30 2.0
03_06_0308 - 33033073-33033130,33033224-33033568,33033655-33033839 30 2.0
01_01_1023 - 8070122-8070808 30 2.0
09_01_0049 + 847576-847854 29 2.7
12_02_0592 + 20868884-20868954,20869091-20869216,20869554-208698... 29 3.6
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 29 3.6
07_01_0975 + 8223269-8224354 29 3.6
06_01_0499 - 3581145-3582425 29 3.6
03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240 29 3.6
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 29 4.7
05_07_0190 - 28279328-28280149 29 4.7
04_03_0792 + 19693957-19694146,19695614-19696260 29 4.7
04_03_0738 + 19169764-19169897,19169987-19170116,19170614-191706... 29 4.7
07_01_1084 + 9885562-9885696,9885762-9886220,9886269-9886619 28 6.2
03_02_0950 + 12661008-12662312,12662403-12662576 28 6.2
10_08_1037 - 22477358-22478752 28 8.3
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 28 8.3
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228... 28 8.3
03_05_1147 - 30744180-30744350,30744439-30744924 28 8.3
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 34.3 bits (75), Expect = 0.095
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 574 PPARDQATGPSDSRRSHQLPQNVTITESGGELLVIACRPAD-TPACLSTE 428
PP ++ PS SRR Q + T +GG+ RP D TP S E
Sbjct: 148 PPTTPRSRAPSSSRRRRMAAQTLATTAAGGQTAAEVARPPDSTPPAESGE 197
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -1
Query: 647 GGNPGVGTAAPRAASTTWWRPASTTACSGPSDGTIGLSP 531
G P G+AAP AAS AS SGP+DG L P
Sbjct: 101 GAGPPAGSAAPAAASPQ----ASAAPSSGPTDGLGSLFP 135
>05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306
Length = 433
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 619 RRALQALPGGGRRALPPARDQATGPSDSRRSHQLPQNVTITE--SGGELL 476
RR + GGRRA P AR A G + R H L + + E GG +L
Sbjct: 93 RRGAEVRGAGGRRAPPRARPPARGGAPRRPHHPLHRLYLVLELARGGSVL 142
>10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496
Length = 389
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 626 TAAPRAASTTWWRPASTTACSGPSDGTIGLSPISS 522
+A PR+ S + P ST CSG D T+ P SS
Sbjct: 232 SACPRSYSYAFDDPTSTFTCSGGPDYTLTFCPASS 266
>03_06_0308 - 33033073-33033130,33033224-33033568,33033655-33033839
Length = 195
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 647 GGNPGVGTAAPRAASTTWWRPASTTAC---SGPSDGTIGLSPISSI 519
GG GV R+AS+T AS TAC +G D G SP S +
Sbjct: 18 GGGDGVAAKKRRSASSTVKSEASGTACCGGAGARDVEDGASPASKV 63
>01_01_1023 - 8070122-8070808
Length = 228
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +1
Query: 571 AVVLAGRHQVVLAARGAAVPTPGLPPHAASTRAPG 675
AVVL G ++ L G P+P PPHAA+ APG
Sbjct: 100 AVVLRGTMEI-LGLAGCFFPSP--PPHAAAEGAPG 131
>09_01_0049 + 847576-847854
Length = 92
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 532 GESPMVPSLGPEQAVVLAGRHQVVLAARGAAVPT--PGLPPHAASTRAPGNCPGVAP 696
G + M P+ P + L + AA A+ + P +PPHAAST A + AP
Sbjct: 3 GHTSMSPTTTPHRQAGLHEASRRPPAAERVALASMLPAVPPHAASTYAASDSASSAP 59
>12_02_0592 +
20868884-20868954,20869091-20869216,20869554-20869862,
20870017-20870300,20870410-20871305,20871586-20871642,
20872293-20872340,20873046-20873114
Length = 619
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = -1
Query: 701 CLGATPGQFPGARVEAACGGNPGVGTAAPRAASTTWWRPASTTACSGPS-----DGTIGL 537
C+ P FP RV A+ GNP VGT + S W +S SG S GT+
Sbjct: 439 CMVTMP--FPRRRV-ASYDGNPSVGTVSMTEHSIEWRIVSSGRGLSGRSIEATFSGTVRF 495
Query: 536 SPIS 525
PI+
Sbjct: 496 HPIT 499
>12_01_0503 -
3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 531 RRESDGPVAWSRAGGSARRPPPGSACSARRRGTDTR 638
RR SDG +A G S + PPP S R R R
Sbjct: 880 RRRSDGCLAARDGGSSGKPPPPSSPSVRRVRSLPAR 915
>07_01_0975 + 8223269-8224354
Length = 361
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 695 GATPGQFPGARVEAACGGNPGVGTAAPRAASTTWWRPASTTACSGPSDG 549
G+ G G+ G P G ++ AAS P+S+ A SGP++G
Sbjct: 266 GSPSGSPAGSPAGGPTAGGPASGPSSYGAASGPAEGPSSSGAASGPAEG 314
>06_01_0499 - 3581145-3582425
Length = 426
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 638 PGVGTAAPRAASTTWWRPASTTACSGPSDG 549
PG G AA A WW P S A + DG
Sbjct: 114 PGHGAAAELAHVRAWWSPTSHAAAADWDDG 143
>03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240
Length = 336
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 626 TAAPRAASTTWWRPASTTACSGPSDGTIGLSPISS 522
+A PR+ S + P ST C+G D TI P+++
Sbjct: 214 SACPRSYSYAYDDPTSTFTCAGGRDYTITFCPVAT 248
>08_01_0036 -
267236-268165,268255-268299,268485-268574,269485-269805,
269895-270098,271532-271664,271810-271881,273106-273168,
273252-275034,275169-275217
Length = 1229
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = -2
Query: 622 RRRALQALPGGGRRALPPARDQATGPSDSRRSHQLP 515
RRR L AL R LPP D AT P +R LP
Sbjct: 255 RRRLLNALVAASRLTLPP--DVATAPLFARSDADLP 288
>05_07_0190 - 28279328-28280149
Length = 273
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 665 RVEAACGGNPGVGTAAPRAASTTWWRPASTTACSGPSDGTIGLSPIS 525
R E A P A+ RAAS T +T++ G DG + +S S
Sbjct: 203 RAEDAKAATPSRPVASERAASETTTTTTTTSSSYGSPDGVLSMSAAS 249
>04_03_0792 + 19693957-19694146,19695614-19696260
Length = 278
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -1
Query: 623 AAPRAASTTWWRPASTTACS--GPSDGTIGLSPISSITTERDHHREWR*TPRYCVQT 459
A R +S+ WRPA+T A + GP G P++ + D++ R PR+ +++
Sbjct: 5 AGRRLSSSLSWRPAATAAAAAGGPRGG-----PLAGKNDDDDNNGNGRVQPRFSIES 56
>04_03_0738 +
19169764-19169897,19169987-19170116,19170614-19170687,
19171208-19171288,19172054-19172087
Length = 150
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3
Query: 564 RAGGSARRPPPGS 602
RAGG A RPPPGS
Sbjct: 72 RAGGEAHRPPPGS 84
>07_01_1084 + 9885562-9885696,9885762-9886220,9886269-9886619
Length = 314
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 558 WSRAGGSARRPPPGSACSARRRGTDTRVTPTR 653
W RA G ARRP G+A S +R TR
Sbjct: 188 WRRANGVARRPEDGAAVSDGATAGTSRAGATR 219
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -1
Query: 674 PGARVEAACGGNPGVGTAA--PRAASTTWW--RPASTTACSGPSDG 549
PGA A G GVG +A + A TT W +P+ +A +G G
Sbjct: 46 PGATAGGAAAGGVGVGGSAWTHQPAKTTSWTHQPSPASAAAGAGSG 91
>10_08_1037 - 22477358-22478752
Length = 464
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 581 SPAATR*C-LQRAAPRYRHPGYPHTPLRHAHQETAP 685
SPAA R L + P+ +H +PH PL HQ+ P
Sbjct: 229 SPAAHRGDPLPASPPQPQHQHHPHRPLPPQHQQPKP 264
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 582 RRPPPGSACSARRRGTDTRVTPTRRFDTRTRKLPRR 689
RRPPP ARRR T PT R R+ R+
Sbjct: 46 RRPPPSPTPPARRRPTKPASPPTGAALYRARRCRRK 81
>04_03_0905 -
20722090-20722207,20722314-20722395,20722698-20722851,
20723026-20723089,20724282-20724404,20725326-20725452,
20725541-20726171
Length = 432
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = -1
Query: 692 ATPGQFPGARVEAACGGNPGVGTAAPRAASTTWWRPASTTACSGPSDGTIGLSPISSITT 513
A P + P R GG G G AP TT +PA+TT + D + ++
Sbjct: 102 AAPVELP--RGGGGGGGGGGRGACAPSRCRTTAVQPAATTTTTRGGDASRAQVLVAPSMA 159
Query: 512 ERDHHRE 492
R HRE
Sbjct: 160 PR-RHRE 165
>03_05_1147 - 30744180-30744350,30744439-30744924
Length = 218
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -2
Query: 625 PRRRALQALPGGGRRALPPAR 563
PRR A PG G RAL PAR
Sbjct: 23 PRRAGAAATPGYGSRALVPAR 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,122,389
Number of Sequences: 37544
Number of extensions: 439588
Number of successful extensions: 2167
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2160
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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