Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0190
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   44   2e-04
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    28   8.4  

>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 651 VWG*PGCRYRGAARCKHYLVAAGEH-YRLLGTKRRDHRTLADLINYHRT*P 502
           VWG     YR   RCKHYLV   E  Y+  G  +  H TL DLI +H+  P
Sbjct: 833 VWGYT-ITYRAEERCKHYLVDTSEQTYQFFGHNQIAHPTLNDLIEFHKVRP 882


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -1

Query: 686 PGQFPGARVEAACGGNPGVGTAAPRAASTTW--WRP-ASTTACSGPSDGTIGLSP-ISSI 519
           P   P        GG PG+        +TT     P  STT  +GP+ GT  L P +++I
Sbjct: 774 PSSNPNESTTPTTGGRPGLNPQGQVTTATTAPSSNPNESTTPTTGPTTGTTALPPGVTTI 833

Query: 518 TT 513
           TT
Sbjct: 834 TT 835



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -1

Query: 686 PGQFPGARVEAACGGNPGVGTAAPRAASTTWWRPASTTACSGPSDGTIGLSPISSITT 513
           PGQ PG +   A GG PG+        +TT        + +  + G  GL+P   +TT
Sbjct: 744 PGQLPGQQPGQA-GGRPGLNPQGQVTTATTAPSSNPNESTTPTTGGRPGLNPQGQVTT 800


>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2033

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -3

Query: 612 RCKHYLV--AAGEHYRLLGTKRRDHRTLADLINYHRT*P 502
           RCKHY++       Y ++G  +  ++TL DL+ YH+T P
Sbjct: 870 RCKHYMIDQTRSGKYIIVGMPKV-YKTLNDLVIYHKTTP 907


>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 517 VIDEIGESPMVPSLGPEQAVVLAGRHQVVLAARGAAVPTPGLPPHAASTR 666
           +++ + ESP+VPSL  + A        +   ++  AV  PG+   +AST+
Sbjct: 398 IVNPVAESPIVPSLLNQSAPPNQSSSSMPTVSQSVAVRQPGISRESASTQ 447


>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 571 AVVLAGRHQVVLAARGAAVPTPGLPPHAASTRAPGNC 681
           A+VL   H  +L  +    PTP  PP  A TR+P  C
Sbjct: 288 ALVLPTMHLQLLLTK----PTPATPPSRAPTRSPSGC 320


>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3296

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 520 IDEIGESPMVPSLGPEQAVVLAGRHQVVLAARGAAVPTPGLPPHAASTRAPGNCP--GVA 693
           + ++G +P  P + P+  + L    Q  +A +    P PG+         PGN P  G+A
Sbjct: 627 VGQLGIAPQ-PGIAPQPGIAL----QPGIALQPGIAPQPGIALQPGIALQPGNAPQPGIA 681

Query: 694 PR 699
           P+
Sbjct: 682 PQ 683


>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 538  SPMVPSLGPEQAVVLAGRHQVVLAARGAAVPTPGLPPHAAST 663
            +P +P   P  A       +++   R  A+  P  PPHAAST
Sbjct: 990  APHLPHTPPRAAFTPYATVRLIYPIRHRALNLPHTPPHAAST 1031


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,447,010
Number of Sequences: 59808
Number of extensions: 460324
Number of successful extensions: 1291
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)