Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0190
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    36   0.037
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    30   1.8  
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z79759-7|CAE18047.1|  239|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL117203-5|CAB55107.1|  291|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF040648-3|AAL06034.2|  453|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    28   7.4  
Z81143-4|CAB03516.1|  189|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 692 ATPGQFPGARVEAACGGNPGVGTAAPRAASTTWWRPASTTACS-GPSDGTIGLSPISSIT 516
           +TP + P A      G +    T+AP   S     PA+TTA S  P+  T GL   SS T
Sbjct: 392 STPAKTPAAPTAGLFGASSTTTTSAPATGSLFGTAPATTTATSAAPAASTGGLFGASSTT 451

Query: 515 T 513
           T
Sbjct: 452 T 452


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 656  AACGGNPGVGTAAPRAASTTWWRPASTTACSGPSDGTIGLSPISSITT 513
            ++ G      TA+P A+ST    P+ST   S  S GT+G +   S TT
Sbjct: 1496 SSAGSTVASSTASPAASSTA---PSSTGTMSSTSSGTVGSTISESSTT 1540



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = -1

Query: 692  ATPGQFPGARVEAACGGNPGVGTAAPRAASTTWWRPASTTACSGPSDGTIGLSPISSIT 516
            A+ GQ   +  + +  G+  V + A  AAS+T   P+ST   S  S GT+G +   S T
Sbjct: 1732 ASSGQPQMSTSQGSSAGSTVVSSTASPAASST--APSSTGTMSSTSSGTVGSTMSQSST 1788


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = +1

Query: 550 PSLGPEQAVVLAGRHQVVLAARGAAVPTPGLPPHAASTRAPGNCPGVAP 696
           P+  P  A   AG +Q   AA GAA P P   P AA+   P   P  AP
Sbjct: 345 PAPAPAAAAAPAGGYQGGAAA-GAAAPPPA--PAAAAAPEPAPAPAAAP 390


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 606 KHYLVAA-GEHYRLLGTKRRDHRTLADLINYH 514
           KH+LV    E Y+ LGT +  H  L DL+ YH
Sbjct: 440 KHFLVEKIKEGYQFLGTNQVVHDELFDLVAYH 471


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 606 KHYLVAA-GEHYRLLGTKRRDHRTLADLINYH 514
           KH+LV    E Y+ LGT +  H  L DL+ YH
Sbjct: 440 KHFLVEKIKEGYQFLGTNQVVHDELFDLVAYH 471


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
            F36H2.3 protein.
          Length = 1388

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
 Frame = -1

Query: 695  GATPGQFP-GARVEAACGGNPGVGTAAPRAASTTWWRPASTTACSGPSDGTIG 540
            G T G FP G  V  +C     +  A+    S   W P     CS     T G
Sbjct: 1001 GGTMGPFPSGTTVTGSCTNGGAITGASTATCSNGMWNPTFLGTCSLIGGSTTG 1053


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 582 RRPPPGSACSARRRGTDTRVTPTRRFDTRTRKLPRR 689
           RR P GS   + RR       P RR   + R+ PRR
Sbjct: 467 RRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRR 502


>Z79759-7|CAE18047.1|  239|Caenorhabditis elegans Hypothetical
           protein ZK858.8 protein.
          Length = 239

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -2

Query: 700 VWAPRRGSFLVRVSKR-RVGVTRVSVPRRRALQALPGGGRRALPPARDQATGPSDSRRSH 524
           +W P    F++   +R + G  R     +  ++      R   PP R  A  P+ +RR+H
Sbjct: 4   IWNPEFHQFMMNNQQRAQAGGNRQFQAVQPQIRQNQVVDRNIQPPRRHNAPAPNQNRRNH 63

Query: 523 QLPQN 509
           Q   N
Sbjct: 64  QQRHN 68


>AL117203-5|CAB55107.1|  291|Caenorhabditis elegans Hypothetical
           protein Y48C3A.8 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
 Frame = +1

Query: 529 IGESPMVPSLGPEQAVVLAGRHQVVLAARGAAVPT------PGLPPHAASTRAPGNCPGV 690
           +G  PM P+        ++  HQ + A   AA P       PG P    S   PG+ P V
Sbjct: 58  MGMPPMPPTSSSAMPFGMSSDHQPMSAGPAAAAPGATTAGGPGTPGMIGSVPGPGSVPQV 117

Query: 691 A 693
           A
Sbjct: 118 A 118


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 695 GATPGQFPGARVEAAC--GGNPGVGTAAPRAASTTWWRPASTTACSGPSDG 549
           GAT  QF   + + +C  GGN  V      A S      +S+++ SGP+ G
Sbjct: 684 GATGAQFDPLKEQKSCRGGGNQTVDGMIRNAQSFATSSSSSSSSSSGPASG 734


>AF040648-3|AAL06034.2|  453|Caenorhabditis elegans Hypothetical
           protein H19M22.3c protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -2

Query: 538 SRRSHQLPQNVTITESGGELLVIACRPADTPACLSTE*TIDSVSRTRSV*LDK 380
           S  SH LP  V   E  G +  +    A  P C  T+   +   RT+   L K
Sbjct: 47  SASSHVLPSEVLEVEQTGNVDEMTVEAASKPRCTQTDVRQEQTKRTKRFTLSK 99


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +1

Query: 514  VVIDEIGESPMVPSLGPEQAVVLAGRHQVVLAARGAAVPTPGLPPHAASTRAPGNCP--G 687
            + +DEI  +P  P+L P  AV  AGR   V    G   P   L P A + R     P  G
Sbjct: 1169 LTLDEILANPEQPALDPLSAVGGAGRRHTV---AGLETPDSALKP-APTKRKASEAPSAG 1224

Query: 688  VAPR 699
            VA +
Sbjct: 1225 VATK 1228


>Z81143-4|CAB03516.1|  189|Caenorhabditis elegans Hypothetical
           protein ZK265.6 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 410 DAVYSLFCGETSRCIGRSARNNEEFTSTLGDGHVLW 517
           D  + LF  ET  C+   AR+ E+F +   D   LW
Sbjct: 128 DRKFRLFHRETELCVYMLARHGEDFQAMTRDPKNLW 163


>Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical
           protein C15C6.3 protein.
          Length = 541

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = +3

Query: 531 RRESDGPVAWSRAGGSARRPPPGSACSARRRGTDTRVTPTRR-----FDTRTRK 677
           RRE  G V+W  A  +A+R   G   +   RG+ +   P +R      D RT K
Sbjct: 46  RREDPGTVSWEAALLAAKRAVNGREDAEADRGSTSPTDPDKRAIPSLLDIRTHK 99


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 558 WSRAGGSARRPPPGSACSARRRGTDTRVTPTRRFDTRTR-KLPRRGAQT 701
           WSR GG   R    +  S R++G D      +R  +R+R + P+R   +
Sbjct: 67  WSRGGGGGGRDRGRNDFSYRKKGKDYNKRRDKRSRSRSRHRSPKRSGSS 115


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 656 AACGGNPGVGTAAPRAASTTWWRPASTTACSGPSDGTIGLSPISSITT 513
           A+   NPG  T+   A +T       T + +G +  T+   P+SS T+
Sbjct: 824 ASSTANPGSSTSGQTAVTTQGSSSTQTNSNTGSTGSTVTNPPVSSSTS 871


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,687,735
Number of Sequences: 27780
Number of extensions: 340909
Number of successful extensions: 1123
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)