Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0190
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26400.1 68416.m03292 eukaryotic translation initiation facto...    33   0.18 
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa...    33   0.24 
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa...    33   0.24 
At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family...    31   0.56 
At5g20230.1 68418.m02408 plastocyanin-like domain-containing pro...    31   0.74 
At4g32490.1 68417.m04625 plastocyanin-like domain-containing pro...    29   3.9  
At3g52990.1 68416.m05841 pyruvate kinase, putative similar to py...    29   3.9  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   6.9  
At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family...    28   6.9  
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ...    28   6.9  
At2g36580.1 68415.m04486 pyruvate kinase, putative similar to py...    27   9.1  

>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
           4B, putative/ eIF-4B, putative similar to eukaryotic
           initiation factor 4B [Arabidopsis thaliana] GI:6739518
          Length = 532

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 528 DRRESDGPVAWSRAGGSARRPPPGSACSARRRGTDTRVT 644
           DR +SDG  +WS  GG   R P G      RRG  +RV+
Sbjct: 124 DRDDSDG--SWSGGGGGGGRRPYGGGFDDDRRGNQSRVS 160


>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 644 GNPGVGTAAPRAAST-TWWRPASTTACSGPSD--GTIGLSPISSITTERDHH 498
           G P   +++  AA   TWWR   +++  GPSD   +IG+     +  +  HH
Sbjct: 51  GRPTYASSSSHAAQDHTWWRFGESSSIPGPSDQVNSIGIKTSHQLPQDGTHH 102


>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 644 GNPGVGTAAPRAAST-TWWRPASTTACSGPSD--GTIGLSPISSITTERDHH 498
           G P   +++  AA   TWWR   +++  GPSD   +IG+     +  +  HH
Sbjct: 51  GRPTYASSSSHAAQDHTWWRFGESSSIPGPSDQVNSIGIKTSHQLPQDGTHH 102


>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
           protein identical to gi|4775268|emb|CAB42531
          Length = 150

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -1

Query: 641 NPGVGTAAPRAASTTWWRPASTTACSGPSDGTIGLSPISSITT 513
           +P     AP  +S     P ST+A  GPSDG    SP S   T
Sbjct: 88  SPSDSAEAPTVSSPPAPTPDSTSAADGPSDGPTAESPKSGAVT 130


>At5g20230.1 68418.m02408 plastocyanin-like domain-containing
           protein
          Length = 196

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 695 GATPGQFPGARVEAACGGNPGV-GTAAPRAASTTWWRPAS-TTACSGPSDGTIG 540
           GAT G  PGA    A G  P   GT  P A  TT    +S TT  +G +  ++G
Sbjct: 127 GATGGATPGAGATPAPGSTPSTGGTTPPTAGGTTTPSGSSGTTTPAGNAASSLG 180


>At4g32490.1 68417.m04625 plastocyanin-like domain-containing
           protein
          Length = 221

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 550 PSLGPEQAVVLAGRHQVVLAARGAAVPTPGLPPHAASTRAPGNCPGVAPR 699
           PS  P +  +L+     V  A  +  PTPG+ P  +   AP   P  A R
Sbjct: 147 PSASPVRKALLSPAPIPVHKALSSPAPTPGVDPSHSEVLAPAPGPAAAVR 196


>At3g52990.1 68416.m05841 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Glycine max]
           SWISS-PROT:Q42806
          Length = 527

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 544 MVPSLGPEQAVVLAGRHQVVLAARGAAVPTPGLPPHAASTRAPGNCPGVA 693
           M+ ++GPE  V+      + L A G    TP     A+S   P N  G+A
Sbjct: 90  MLDTVGPELQVINKSEKAITLKADGLVTLTPNQDQEASSEVLPINFNGLA 139


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 619 AAVPTPGLPPHAASTRAPGNCPGVAP 696
           +  P+PG PP + +T  PG  P  +P
Sbjct: 460 STTPSPGSPPTSPTTPTPGGSPPSSP 485


>At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family
           protein related to LENOD2 [Lupinus luteus]
           gi|296830|emb|CAA39050;  and genefinder
          Length = 302

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 541 PMVPSLG--PEQ-AVVLAGRHQVVLAARGAAVPTPGLPPHAASTRAPGNCPGVAP 696
           P+ PS G  P Q A +   ++  V        P+PG PPH  +  +    PGV P
Sbjct: 53  PVPPSPGHPPHQNAKISVNQYPSVFPIPHPVPPSPGHPPHQNTKISVNQYPGVFP 107


>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
           YT521-B-like family protein low similarity to cleavage
           and polyadenylation specificity factor 30 kDa subunit
           [Bos taurus] GI:2327052; contains Pfam profiles PF00642:
           Zinc finger C-x8-C-x5-C-x3-H type (and similar),
           PF04146: YT521-B-like family; supporting cDNA
           gi|24415581|gb|AY140901.1|
          Length = 678

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -1

Query: 695 GATPGQFPGARVEAACGGN-PGVGTA--APRAASTTWWRPASTTACSGPSD 552
           G  P QFP        GG  P +G    APR     ++ PA+++A  GPS+
Sbjct: 568 GRPPQQFPHGGYGMMGGGRGPHMGGMGNAPRGGRPMYYPPATSSARPGPSN 618


>At2g36580.1 68415.m04486 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Glycine max]
           SWISS-PROT:Q42806
          Length = 527

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 544 MVPSLGPEQAVVLAGRHQVVLAARGAAVPTPGLPPHAASTRAPGNCPGVA 693
           M+ ++GPE  V+      + L A G    TP     A+S   P N  G+A
Sbjct: 90  MLDTVGPELQVINKTEKAISLKADGLVTLTPSQDQEASSEVLPINFDGLA 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,592,108
Number of Sequences: 28952
Number of extensions: 300818
Number of successful extensions: 773
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)