Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0188
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.6  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   1.6  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   5.0  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   8.8  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 508 HIFLDCPNIVSPLYDILPNDIPRPININCLLTLVYSKHVN 389
           HI L+  +++  +  I P   P P  INC +  ++S ++N
Sbjct: 614 HIQLEVHSLLLVITAIRPEISPEPRGINCSIDKIHSLYLN 653


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 310 LKPQIRVWKNRPNLLVFRLV---IFSLSKHLSFL 218
           L  ++R W N  NLL  +++   ++S  K LSFL
Sbjct: 65  LSEKVREWNNESNLLELQMIRDSVWSYIKELSFL 98


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 215  NTLTLAKSMPKALEPNY 165
            N+LTL  SMP++  P+Y
Sbjct: 1349 NSLTLTSSMPRSFTPSY 1365


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 502 FLDCPNIVSPLYDILPNDIPRPININCLLTL 410
           +LD P ++  L  IL ++ P PI    L TL
Sbjct: 727 YLDYPPLLGALIGILQSEQPTPIRREVLRTL 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,629
Number of Sequences: 5004
Number of extensions: 35702
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)