Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0188
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16291| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-11)          29   3.0  
SB_52921| Best HMM Match : BTB (HMM E-Value=0.13)                      28   5.2  
SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_16291| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-11)
          Length = 423

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 198 CQCQSIYKNDRCLEREKITNLNTSKFGRFFHTRIC 302
           CQC+  +  D C E + I N++     RF  +R C
Sbjct: 140 CQCELGFVGDTCDESKAIKNIDKQSANRFALSRHC 174


>SB_52921| Best HMM Match : BTB (HMM E-Value=0.13)
          Length = 129

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 472 LYDILPNDIPRPININCLLTLVYSKHVNILCKFLSA 365
           LYDI   +  +P  +N +L  +Y+ H+++ CK L +
Sbjct: 92  LYDITFEESIKPEAMNSVLAWMYTGHLDLKCKDLQS 127


>SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 499 LDCPNIVSPLYDILPNDIPRPININCL 419
           +DC  +++P+  ++P D  +PI+ + L
Sbjct: 156 IDCDKLIAPVMSLIPTDPDQPIDASTL 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,375,320
Number of Sequences: 59808
Number of extensions: 252611
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)