Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0188
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical...    27   6.0  
AC084155-1|AAG23361.2|  352|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical protein
            Y37A1B.17a protein.
          Length = 1538

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 496  DCPNIVSPLYDILPNDIPRPININCLLTLV 407
            D P  ++P+YD LPN+ P    I  +L  V
Sbjct: 1437 DTPPTIAPIYDQLPNESPASTAIRPVLCQV 1466


>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
            protein Y37A1B.17a protein.
          Length = 1538

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 496  DCPNIVSPLYDILPNDIPRPININCLLTLV 407
            D P  ++P+YD LPN+ P    I  +L  V
Sbjct: 1437 DTPPTIAPIYDQLPNESPASTAIRPVLCQV 1466


>AC084155-1|AAG23361.2|  352|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.6 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +3

Query: 189 H*FCQCQSIYKNDRCLEREKITNLNTSKFGRFFHTRICGFKN 314
           H  C CQ  Y NDR      + N    K+ R    R C  KN
Sbjct: 87  HILCVCQGSYCNDRI-----VMNTTRQKYTRTIQCRECSEKN 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,803,805
Number of Sequences: 27780
Number of extensions: 201000
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)