Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0188
         (514 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              24   0.80 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.5  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 24.2 bits (50), Expect = 0.80
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 47  QAYGPPDGKVVTVAHGRQQC 106
           ++Y  PDG+V+T+ + R +C
Sbjct: 13  KSYELPDGQVITIGNERFRC 32


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 36  NQADRLTAHLMVKWLPSLMDVSNARDK 116
           +   RL  H+  +W+    DVS  R+K
Sbjct: 695 SHTQRLVVHVPPRWIVEPTDVSVERNK 721


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 289 WKNRPNLL 266
           W NRPNLL
Sbjct: 674 WSNRPNLL 681



 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 227 VIFVNTLTLAKSMPKALEPNYLK 159
           ++ +N  TLA   P  L  N+LK
Sbjct: 345 IMLLNEKTLAVPAPPVLPENHLK 367


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 289 WKNRPNLL 266
           W NRPNLL
Sbjct: 674 WSNRPNLL 681



 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 227 VIFVNTLTLAKSMPKALEPNYLK 159
           ++ +N  TLA   P  L  N+LK
Sbjct: 345 IMLLNEKTLAVPAPPVLPENHLK 367


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 289 WKNRPNLL 266
           W NRPNLL
Sbjct: 674 WSNRPNLL 681



 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 227 VIFVNTLTLAKSMPKALEPNYLK 159
           ++ +N  TLA   P  L  N+LK
Sbjct: 345 IMLLNEKTLAVPAPPVLPENHLK 367


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = +3

Query: 108 RDKAKPLPTAMXXXXXXXXVIWLQRLWH*FC 200
           RD    LP  M        V WL  +W   C
Sbjct: 62  RDSRLRLPENMSEDYRILDVDWLHNIWRPDC 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,332
Number of Sequences: 438
Number of extensions: 2735
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)