Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0187
         (633 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.7  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   3.7  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   3.7  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   8.6  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 174 KCKNIRRRPKAVVPRV 221
           KC ++  RP+ VVP V
Sbjct: 247 KCLSVGMRPECVVPEV 262


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 444 HHHPHVPRH 470
           HHH H+P H
Sbjct: 51  HHHSHMPPH 59


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 444 HHHPHVPRH 470
           HHH H+P H
Sbjct: 51  HHHSHMPPH 59


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 548 LAPRRDQVLVGPKVLP 595
           +AP+ DQ ++ P+V P
Sbjct: 549 IAPQLDQAVIQPQVKP 564


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,735
Number of Sequences: 336
Number of extensions: 2597
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)