Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0187
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    28   1.3  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   1.7  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   2.3  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   3.9  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   3.9  

>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 162 YFRYGRHVSITCDIRYFVYYYFNE 91
           Y+R    V+ TCDI Y  +YY  E
Sbjct: 166 YWRVEPDVAFTCDISYDPFYYMEE 189


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 162 YFRYGRHVSITCDIRYFVYYYFNEALLKVIYLSLISCARF-KTITSVFR 19
           Y+R    V+ +CDI Y  +YY ++     +Y  +I+     KT+ ++FR
Sbjct: 222 YWRLEPEVTFSCDISYDPFYYMDKH--NKVYGYVIAIKELAKTVPNLFR 268


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/17 (58%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
 Frame = +3

Query: 444 HHHPHV--PRHRLQPHF 488
           HHHPH   P H   PHF
Sbjct: 168 HHHPHTRPPHHPPHPHF 184


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = -2

Query: 356 TFTASSY-----TATRDTATAPYTLKITQIPLSSQNAPN 255
           T T SSY     T+   T   PYT  +   P ++ +APN
Sbjct: 96  TVTVSSYWSLVSTSVTGTVYVPYTSSVACFPYATSDAPN 134


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 279 WNLCDF*CIRCGGGISSRGV 338
           WNL  F CIRC G   S GV
Sbjct: 42  WNLGVFICIRCSGVHRSLGV 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,161
Number of Sequences: 5004
Number of extensions: 44747
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)