Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0187
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1269 + 28865236-28865819,28866124-28866754                       30   1.8  
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    29   4.1  
10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223     28   5.4  
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151...    28   7.1  
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488...    28   7.1  
09_04_0442 - 17630039-17630782                                         27   9.4  

>06_03_1269 + 28865236-28865819,28866124-28866754
          Length = 404

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 536 GSPILAPRRDQVLVGPKVLPCAPCTRRSAS 625
           G P     R +V V P  LPC PC+R + S
Sbjct: 349 GKPARVIPRMEVTVMPSCLPCLPCSRSNGS 378


>05_05_0155 +
           22787658-22787930,22788029-22788096,22789600-22789915,
           22790207-22790323
          Length = 257

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 447 HHPHVPRHRLQPHFLPQRAGPDTQEEA 527
           HHPH P H   PH  P    PD   EA
Sbjct: 64  HHPHPPHHPHPPHHHP-HPHPDPAAEA 89


>10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223
          Length = 254

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 471 RLQPHFLPQRAGPDTQEEAGLEVHQYWPLVEIKCSSDLKFFLVLRVHADLHR 626
           RL+   +    GP+ +EE  +   + WP       S   FF   +VHAD HR
Sbjct: 13  RLKNRRIMGGGGPEPEEEEAVAHGEQWPRWLSPLLS-ASFFSQCKVHADSHR 63


>11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,
            1510195-1510256,1510406-1510479,1510812-1510864,
            1511072-1513550
          Length = 1134

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/53 (24%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
 Frame = +1

Query: 100  IIIHKISNIARNRD-----VTAVSKISHRLNVKIYGVALKPWCRV*LIDILND 243
            ++I K+ N+ +NR+     +  +S+I+H   V+IYG   + + R+ +++ + +
Sbjct: 873  VVIKKLENVTQNREEFQDELHVISRINHMNLVRIYGFCSERFHRLLVLEYVEN 925


>05_01_0558 -
           4880811-4880996,4881098-4881178,4881247-4881393,
           4881985-4882029,4882370-4883134
          Length = 407

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 358 LRLPHRLTPRLEIPP-PHRIH*KSH 287
           LR PHRL+P    PP PHR+  ++H
Sbjct: 34  LRPPHRLSPFSAPPPEPHRLTYRTH 58


>09_04_0442 - 17630039-17630782
          Length = 247

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 367 WTALRLPHRLTPRLEIPPPH 308
           W   RLP    PRL+ PPPH
Sbjct: 198 WHRRRLPIHPPPRLKPPPPH 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,229,846
Number of Sequences: 37544
Number of extensions: 306562
Number of successful extensions: 747
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)