Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0187
(633 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48107| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_50198| Best HMM Match : Frizzled (HMM E-Value=0) 52 4e-07
SB_41787| Best HMM Match : Frizzled (HMM E-Value=0) 51 7e-07
SB_7486| Best HMM Match : Frizzled (HMM E-Value=0) 43 2e-04
SB_22490| Best HMM Match : Fz (HMM E-Value=8.3e-32) 41 0.001
SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 29 3.1
SB_767| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_48010| Best HMM Match : Fz (HMM E-Value=1.1e-15) 28 7.2
SB_45625| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 27 9.6
SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_48107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 329
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = +3
Query: 486 FLPQRAGPDTQEEAGLEVHQYWPLVEIKCSSDLKFFL 596
++P DTQ EA LEVHQ+WPLVEI+CS DL+FFL
Sbjct: 46 YMPNMFNHDTQAEAALEVHQFWPLVEIQCSPDLRFFL 82
Score = 54.8 bits (126), Expect = 6e-08
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +1
Query: 424 QQPRCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCS 603
++ +C++ITIPMCRGIGYNLT PN + + + P LCS
Sbjct: 25 KEMKCEEITIPMCRGIGYNLTYMPNMFNHDTQAEAALEVHQFWPLVEIQCSPDLRFFLCS 84
Query: 604 VYTPIC 621
+Y P+C
Sbjct: 85 MYAPLC 90
>SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)
Length = 654
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/63 (38%), Positives = 31/63 (49%)
Frame = +1
Query: 433 RCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCSVYT 612
+C ITIP+C GIGYN T FPN L +++ R P LCSV+
Sbjct: 31 KCTPITIPLCMGIGYNATRFPNFLAQESQEEAAKRIHEFKPLIAVNCAPLLRFFLCSVFV 90
Query: 613 PIC 621
P+C
Sbjct: 91 PMC 93
>SB_41787| Best HMM Match : Frizzled (HMM E-Value=0)
Length = 542
Score = 51.2 bits (117), Expect = 7e-07
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +1
Query: 433 RCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCSVYT 612
RC+ +TIP+C G+ YN+T FPN L +++ P LCSVY
Sbjct: 28 RCEPVTIPLCTGLQYNMTIFPNTLKHRTQEEAALEVHQFFPLVKVDCSKDLAFFLCSVYA 87
Query: 613 PIC 621
P+C
Sbjct: 88 PVC 90
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 513 TQEEAGLEVHQYWPLVEIKCSSDLKFFL 596
TQEEA LEVHQ++PLV++ CS DL FFL
Sbjct: 55 TQEEAALEVHQFFPLVKVDCSKDLAFFL 82
>SB_7486| Best HMM Match : Frizzled (HMM E-Value=0)
Length = 535
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 433 RCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGP-XXXXXXXXXXXXXLCSVY 609
+C+ I+I +CR +GYN+T PN + +K+ + + P LCS Y
Sbjct: 28 KCEKISIDLCRSVGYNVTRMPNLIGHETQKEAESQLKQFLPLIQYGCAREQLVFFLCSAY 87
Query: 610 TPICIE 627
P+C +
Sbjct: 88 APMCTD 93
>SB_22490| Best HMM Match : Fz (HMM E-Value=8.3e-32)
Length = 308
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 436 CQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCSVYTP 615
CQ IT+P C+ + YN+T PN L T +++ + LC + P
Sbjct: 25 CQPITVPACQSLPYNMTRLPNHLGHTSQRQIEHEINEYSQLISANCSADLVFLLCVYHLP 84
Query: 616 IC 621
IC
Sbjct: 85 IC 86
>SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 138 SITCDIRYFVYYYFNEALLKVIYLSLISCARFKTIT 31
SITC + YFV+Y ++ ++ L +IS R++ +T
Sbjct: 100 SITCKVFYFVFY--TVPVVSLLTLLIISLERYRAVT 133
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/65 (24%), Positives = 24/65 (36%)
Frame = +1
Query: 427 QPRCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCSV 606
Q C+ + +C G GYN T PN L+ + + P +C+
Sbjct: 537 QTSCERLKSKICLGFGYNDTILPNHLNHKSQGEAMRGMQRFLPFIRANCSTSLKALVCAA 596
Query: 607 YTPIC 621
Y P C
Sbjct: 597 YFPRC 601
>SB_767| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +1
Query: 457 MCRGI--GYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCSVYTPICIE 627
MC + GYN PNAL + + P LCSV+ P+C++
Sbjct: 38 MCANLTRGYNKIMLPNALGHDNLAEVRTQLVPWAPLVGSGCSPHLKVFLCSVFMPVCVQ 96
>SB_48010| Best HMM Match : Fz (HMM E-Value=1.1e-15)
Length = 994
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +1
Query: 436 CQDITIPMCRGIGYNLT-SFP 495
C ++T P CR GY+LT +FP
Sbjct: 58 CANLTSPYCRNAGYSLTANFP 78
>SB_45625| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -1
Query: 360 RYVYRIVLHRDSRYRHRTVYTK-NHTNSTIFS 268
RY + + R +RY HRT++T+ + +STIF+
Sbjct: 110 RYEHSTISTR-TRYEHRTIFTRTRYEHSTIFT 140
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 358 LRLPHRLTPRLE-IPPPHRIH*KSHKFHYLLRMHLMNPCYHLKY 230
+R+ RL R + +P PH + SH + +L + + C+H+K+
Sbjct: 244 IRVSERLDARYDWLPSPHAL---SHNYTHLAVRYYGDACHHVKF 284
>SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 358 LRLPHRLTPRLE-IPPPHRIH*KSHKFHYLLRMHLMNPCYHLKY 230
+R+ RL R + +P PH + SH + +L + + C+H+K+
Sbjct: 244 IRVSERLDARYDWLPSPHAL---SHNYTHLAVRYYGDACHHVKF 284
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,962,120
Number of Sequences: 59808
Number of extensions: 358755
Number of successful extensions: 948
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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