Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0187
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homo... 60 2e-09
AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditi... 60 2e-09
AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditi... 60 2e-09
AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein. 60 2e-09
Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical pr... 52 3e-07
AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein. 52 3e-07
U43316-1|AAC46993.1| 525|Caenorhabditis elegans transmembrane r... 48 6e-06
AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell... 48 6e-06
AC006736-1|AAF60492.1| 525|Caenorhabditis elegans Abnormal cell... 48 6e-06
U63557-1|AAC47301.1| 558|Caenorhabditis elegans transmembrane r... 35 0.056
AC024201-2|AAK82924.1| 556|Caenorhabditis elegans Abnormal cell... 35 0.056
AC024201-1|AAF36028.1| 558|Caenorhabditis elegans Abnormal cell... 35 0.056
Z83112-1|CAB05538.1| 742|Caenorhabditis elegans Hypothetical pr... 31 0.69
AF043699-2|AAB97567.1| 311|Caenorhabditis elegans Ubiquitin-lik... 29 2.1
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 2.8
AF025452-5|AAK71872.1| 336|Caenorhabditis elegans Serpentine re... 28 4.8
Z70267-1|CAA94211.1| 307|Caenorhabditis elegans Hypothetical pr... 28 6.4
AC084197-27|AAG23467.2| 314|Caenorhabditis elegans Hypothetical... 28 6.4
Z83104-5|CAC35810.1| 570|Caenorhabditis elegans Hypothetical pr... 27 8.4
AB012700-1|BAA89795.1| 570|Caenorhabditis elegans FLR-4 protein. 27 8.4
>DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homolog
protein.
Length = 578
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = +1
Query: 424 QQPRCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCS 603
++ +C+ ITIP+C+GIGYN+TSFPN+ ++++ P LC+
Sbjct: 21 KRQKCEQITIPLCKGIGYNMTSFPNSYGHEKQEEAGLEVHQFYPLVEVGCFQHLKFFLCT 80
Query: 604 VYTPICIE 627
+YTPIC E
Sbjct: 81 MYTPICQE 88
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +3
Query: 492 PQRAGPDTQEEAGLEVHQYWPLVEIKCSSDLKFFL 596
P G + QEEAGLEVHQ++PLVE+ C LKFFL
Sbjct: 44 PNSYGHEKQEEAGLEVHQFYPLVEVGCFQHLKFFL 78
>AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform a protein.
Length = 578
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = +1
Query: 424 QQPRCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCS 603
++ +C+ ITIP+C+GIGYN+TSFPN+ ++++ P LC+
Sbjct: 21 KRQKCEQITIPLCKGIGYNMTSFPNSYGHEKQEEAGLEVHQFYPLVEVGCFQHLKFFLCT 80
Query: 604 VYTPICIE 627
+YTPIC E
Sbjct: 81 MYTPICQE 88
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +3
Query: 492 PQRAGPDTQEEAGLEVHQYWPLVEIKCSSDLKFFL 596
P G + QEEAGLEVHQ++PLVE+ C LKFFL
Sbjct: 44 PNSYGHEKQEEAGLEVHQFYPLVEVGCFQHLKFFL 78
>AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform b protein.
Length = 550
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = +1
Query: 424 QQPRCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCS 603
++ +C+ ITIP+C+GIGYN+TSFPN+ ++++ P LC+
Sbjct: 21 KRQKCEQITIPLCKGIGYNMTSFPNSYGHEKQEEAGLEVHQFYPLVEVGCFQHLKFFLCT 80
Query: 604 VYTPICIE 627
+YTPIC E
Sbjct: 81 MYTPICQE 88
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +3
Query: 492 PQRAGPDTQEEAGLEVHQYWPLVEIKCSSDLKFFL 596
P G + QEEAGLEVHQ++PLVE+ C LKFFL
Sbjct: 44 PNSYGHEKQEEAGLEVHQFYPLVEVGCFQHLKFFL 78
>AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein.
Length = 550
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = +1
Query: 424 QQPRCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCS 603
++ +C+ ITIP+C+GIGYN+TSFPN+ ++++ P LC+
Sbjct: 21 KRQKCEQITIPLCKGIGYNMTSFPNSYGHEKQEEAGLEVHQFYPLVEVGCFQHLKFFLCT 80
Query: 604 VYTPICIE 627
+YTPIC E
Sbjct: 81 MYTPICQE 88
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +3
Query: 492 PQRAGPDTQEEAGLEVHQYWPLVEIKCSSDLKFFL 596
P G + QEEAGLEVHQ++PLVE+ C LKFFL
Sbjct: 44 PNSYGHEKQEEAGLEVHQFYPLVEVGCFQHLKFFL 78
>Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical
protein T23D8.1 protein.
Length = 568
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +1
Query: 433 RCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCSVYT 612
+C+ ITIPMC+ + YN T FPN L T + + P LC+VY
Sbjct: 36 KCEHITIPMCKNLDYNQTVFPNLLGHTTQSEAGPAIAQFNPLIKVKCSEDIRLFLCTVYA 95
Query: 613 PIC 621
P+C
Sbjct: 96 PVC 98
>AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein.
Length = 568
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +1
Query: 433 RCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCSVYT 612
+C+ ITIPMC+ + YN T FPN L T + + P LC+VY
Sbjct: 36 KCEHITIPMCKNLDYNQTVFPNLLGHTTQSEAGPAIAQFNPLIKVKCSEDIRLFLCTVYA 95
Query: 613 PIC 621
P+C
Sbjct: 96 PVC 98
>U43316-1|AAC46993.1| 525|Caenorhabditis elegans transmembrane
receptor protein.
Length = 525
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/67 (37%), Positives = 29/67 (43%)
Frame = +1
Query: 433 RCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCSVYT 612
RCQ + MC + YNLTSFPN +D K P LCSVY
Sbjct: 25 RCQKVDHEMCNDLPYNLTSFPNLVDEESWKDASESILTYKPLLSVVCSEQLKFFLCSVYF 84
Query: 613 PICIEGL 633
P+C E L
Sbjct: 85 PMCNEKL 91
>AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell
migration protein1, isoform b protein.
Length = 529
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/67 (37%), Positives = 29/67 (43%)
Frame = +1
Query: 433 RCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCSVYT 612
RCQ + MC + YNLTSFPN +D K P LCSVY
Sbjct: 25 RCQKVDHEMCNDLPYNLTSFPNLVDEESWKDASESILTYKPLLSVVCSEQLKFFLCSVYF 84
Query: 613 PICIEGL 633
P+C E L
Sbjct: 85 PMCNEKL 91
>AC006736-1|AAF60492.1| 525|Caenorhabditis elegans Abnormal cell
migration protein1, isoform a protein.
Length = 525
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/67 (37%), Positives = 29/67 (43%)
Frame = +1
Query: 433 RCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCSVYT 612
RCQ + MC + YNLTSFPN +D K P LCSVY
Sbjct: 25 RCQKVDHEMCNDLPYNLTSFPNLVDEESWKDASESILTYKPLLSVVCSEQLKFFLCSVYF 84
Query: 613 PICIEGL 633
P+C E L
Sbjct: 85 PMCNEKL 91
>U63557-1|AAC47301.1| 558|Caenorhabditis elegans transmembrane
receptor LIN-17 protein.
Length = 558
Score = 34.7 bits (76), Expect = 0.056
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +1
Query: 433 RCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCSVYT 612
+C I I +C+ + YN T FPN + + + P +CSV+
Sbjct: 27 KCIPIDIELCKDLPYNYTYFPNTILHNDQHTLQTHTEHFKPLMKTKCHPHIHFFICSVFA 86
Query: 613 PICIEGL 633
P+C G+
Sbjct: 87 PMCPIGM 93
>AC024201-2|AAK82924.1| 556|Caenorhabditis elegans Abnormal cell
lineage protein 17,isoform b protein.
Length = 556
Score = 34.7 bits (76), Expect = 0.056
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +1
Query: 433 RCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCSVYT 612
+C I I +C+ + YN T FPN + + + P +CSV+
Sbjct: 27 KCIPIDIELCKDLPYNYTYFPNTILHNDQHTLQTHTEHFKPLMKTKCHPHIHFFICSVFA 86
Query: 613 PICIEGL 633
P+C G+
Sbjct: 87 PMCPIGM 93
>AC024201-1|AAF36028.1| 558|Caenorhabditis elegans Abnormal cell
lineage protein 17,isoform a protein.
Length = 558
Score = 34.7 bits (76), Expect = 0.056
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +1
Query: 433 RCQDITIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCSVYT 612
+C I I +C+ + YN T FPN + + + P +CSV+
Sbjct: 27 KCIPIDIELCKDLPYNYTYFPNTILHNDQHTLQTHTEHFKPLMKTKCHPHIHFFICSVFA 86
Query: 613 PICIEGL 633
P+C G+
Sbjct: 87 PMCPIGM 93
>Z83112-1|CAB05538.1| 742|Caenorhabditis elegans Hypothetical
protein K02B7.1 protein.
Length = 742
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 444 HHHPHVPRHRLQPHFLPQRAGPDTQEEAGL-EVHQYWPLVEIKCSSDLKFFLVLRVH 611
H H HV L PH+ P+ G +++ + H + L ++C + L LVLR H
Sbjct: 417 HFHKHVLYMHLCPHYSPKGNGICSRQNRWIFHQHLRFHLDFVRCPAKLHSVLVLRKH 473
>AF043699-2|AAB97567.1| 311|Caenorhabditis elegans Ubiquitin-like
protease protein 5 protein.
Length = 311
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Frame = -3
Query: 352 LPH-RLTPRLEIPPPHRIH*KSH-KFHYLLRMHLMNPCYHLKYRSVTRGTTALGRRRIFL 179
+PH +LTP+ E PP R+ +H + + R H++ P +H + T L I
Sbjct: 1 MPHPKLTPKCEAPPEKRL---AHLEIRFKDRRHIIPPLFHNGWVGRNEDRTLLNDTIIEF 57
Query: 178 HLTD----EIFSIRPSRLDYVRYSIF 113
++ D E+F +V +S F
Sbjct: 58 YMCDWMRLEVFDEATRASSHVFHSFF 83
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 229 RSVTRGTTALGRRRIFLHLTDEIFSIRPSRLDYVR 125
R + RGTT G + D IF IRPS + + R
Sbjct: 2684 RMLVRGTTTHGDGGVHTSFFDHIFDIRPSNVAFSR 2718
>AF025452-5|AAK71872.1| 336|Caenorhabditis elegans Serpentine
receptor, class i protein29 protein.
Length = 336
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 114 FVYYYFNEALLKVIYLSLISCARFKTI 34
F Y YFN A + +I+L L + KTI
Sbjct: 187 FYYTYFNSAYIFIIFLVLTAAGTLKTI 213
>Z70267-1|CAA94211.1| 307|Caenorhabditis elegans Hypothetical
protein K04C1.1 protein.
Length = 307
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -1
Query: 144 HVSITCDIRYF--VYYYFNEALLKVIYLSLISCARFKTITSVFRVRNQLK 1
++++ C I F ++YYF A + IY LIS RF ITS+ + + K
Sbjct: 86 NMNMGCPINLFHALHYYF--AYTQYIYNFLISYNRFCAITSLLDIEKRWK 133
>AC084197-27|AAG23467.2| 314|Caenorhabditis elegans Hypothetical
protein Y73B6BL.21 protein.
Length = 314
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = +1
Query: 430 PRCQDI--TIPMCRGIGYNLTSFPNALDPTRRKKPD*RFTNIGPXXXXXXXXXXXXXLCS 603
P+C DI + +C GI Y PN L+ + + LCS
Sbjct: 35 PKCVDIPSNLSICNGIEYTQMRLPNILEHETVSEAIHASKDWESLLRLNCHPDTQRFLCS 94
Query: 604 VYTPICI 624
++ P+C+
Sbjct: 95 LFAPVCL 101
>Z83104-5|CAC35810.1| 570|Caenorhabditis elegans Hypothetical
protein F09B12.6 protein.
Length = 570
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -1
Query: 168 MRYFRYGRHVSITCDIRYFVYYYFNEALLKVIYLSLISCARFKTITSVFRVRNQ 7
+R+ RY ++ CD+ Y + L+ +++ L SC FR+ NQ
Sbjct: 450 VRFVRYLIAINCNCDLMQPQYLIISGILIVLMFALLFSCCMVALGEYKFRMANQ 503
>AB012700-1|BAA89795.1| 570|Caenorhabditis elegans FLR-4 protein.
Length = 570
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -1
Query: 168 MRYFRYGRHVSITCDIRYFVYYYFNEALLKVIYLSLISCARFKTITSVFRVRNQ 7
+R+ RY ++ CD+ Y + L+ +++ L SC FR+ NQ
Sbjct: 450 VRFVRYLIAINCNCDLMQPQYLIISGILIVLMFALLFSCCMVALGEYKFRMANQ 503
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,611,667
Number of Sequences: 27780
Number of extensions: 260320
Number of successful extensions: 677
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -