Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0185
         (669 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0C8E6 Cluster: Chromosome undetermined scaffold_158, w...    38   0.22 
UniRef50_Q8I539 Cluster: Putative uncharacterized protein; n=4; ...    36   0.88 
UniRef50_Q24983 Cluster: Protein phosphatase 2C homolog; n=2; Gi...    36   0.88 
UniRef50_A0D7V4 Cluster: Chromosome undetermined scaffold_40, wh...    34   2.7  
UniRef50_Q5HNF3 Cluster: Cell wall surface anchor family protein...    33   4.7  
UniRef50_A4BYD3 Cluster: Putative surface membrane protein; n=2;...    33   8.2  
UniRef50_A0YCF4 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  
UniRef50_A5UKL3 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  

>UniRef50_A0C8E6 Cluster: Chromosome undetermined scaffold_158,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_158,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1067

 Score = 37.9 bits (84), Expect = 0.22
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
 Frame = +1

Query: 232 KFHVFFKIALDSLNTTERDDIFRK---FFNKL-DTVLNSINTSSVDRLVPLNVILEDYIK 399
           K H F + ++ +LNT  +D+I  K   FFN+   + L S+   S   +  L   ++++ K
Sbjct: 225 KSHPFSQFSIGNLNTLLKDEISEKLKEFFNQAYSSNLMSLVIESSLPISDLKTYIKNFEK 284

Query: 400 CSNNRIIDASCKDTG 444
             NN +++ +C+D G
Sbjct: 285 IKNNNLVEPTCEDFG 299


>UniRef50_Q8I539 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 187

 Score = 35.9 bits (79), Expect = 0.88
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
 Frame = +2

Query: 92  LDNYNSSRYERNIFL---NFSRTFDSLIDDVMKFKDMF-QYIINDE 217
           LD YN+  Y+RNI L   +F +++ S I +++K KD    Y+++DE
Sbjct: 133 LDVYNTFEYKRNIILSHMDFMKSYSSQIKEIIKLKDSINSYMMSDE 178


>UniRef50_Q24983 Cluster: Protein phosphatase 2C homolog; n=2;
           Giardia intestinalis|Rep: Protein phosphatase 2C homolog
           - Giardia lamblia (Giardia intestinalis)
          Length = 360

 Score = 35.9 bits (79), Expect = 0.88
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 457 MYTIRTLSVIFSNIADDR*PILRKLMIQIQILLQVMGFTKSTGLYILYDKIG 612
           M T+R  SV+    A+D  P  RK M  + +++  +G + STG + +YD  G
Sbjct: 1   MATLRLTSVVGIGHAEDPNPRFRKQMEDVCVMIDKLGNSHSTGFFAIYDGHG 52


>UniRef50_A0D7V4 Cluster: Chromosome undetermined scaffold_40, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_40,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 862

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = +1

Query: 445 RTAWMYTIRTLSVIFSNIADDR*PILRKLMIQIQILLQVMGFTKSTGLYILY 600
           + +W+  I TL ++F +I  D   I+  +++ IQIL  +MGF   T  Y ++
Sbjct: 9   KESWIMIIITLLIMFQSIFGDGSLIITIIILGIQILCVMMGFISQTQKYSIH 60


>UniRef50_Q5HNF3 Cluster: Cell wall surface anchor family protein;
            n=3; cellular organisms|Rep: Cell wall surface anchor
            family protein - Staphylococcus epidermidis (strain ATCC
            35984 / RP62A)
          Length = 3692

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +1

Query: 280  ERDDIFRKFFNKLDTVLNSINTSSVDRLVPLNVILEDYIKCSNNRIIDASCKDTGRTAWM 459
            E DDI+ +   K+ T+L  ++T +V R V LN + +  IK   N   D + ++    A  
Sbjct: 2991 EVDDIYNEVSQKMKTILPRVDTKAVARSV-LNALAKQLIKTFEN-TADVTHEER-NDAIN 3047

Query: 460  YTIRTLSVIFSNIADDR 510
            +    LS++F+ I  DR
Sbjct: 3048 HVKEQLSLVFNAIEKDR 3064


>UniRef50_A4BYD3 Cluster: Putative surface membrane protein; n=2;
           Polaribacter|Rep: Putative surface membrane protein -
           Polaribacter irgensii 23-P
          Length = 844

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 20/78 (25%), Positives = 39/78 (50%)
 Frame = +1

Query: 205 YQ*RRNRTLKFHVFFKIALDSLNTTERDDIFRKFFNKLDTVLNSINTSSVDRLVPLNVIL 384
           +Q  R +T++  +F    + +LNT    DI+   F  L++V  + + ++     PL+  L
Sbjct: 502 WQYNRKKTIQLELFNTQYIQNLNTNRFFDIYASEFRNLNSVAETYDIANNTSFYPLSTNL 561

Query: 385 EDYIKCSNNRIIDASCKD 438
           E     ++ R IDA  ++
Sbjct: 562 ETQ-TATSVRFIDAVARN 578


>UniRef50_A0YCF4 Cluster: Putative uncharacterized protein; n=1;
           marine gamma proteobacterium HTCC2143|Rep: Putative
           uncharacterized protein - marine gamma proteobacterium
           HTCC2143
          Length = 388

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 28/108 (25%), Positives = 47/108 (43%)
 Frame = +1

Query: 289 DIFRKFFNKLDTVLNSINTSSVDRLVPLNVILEDYIKCSNNRIIDASCKDTGRTAWMYTI 468
           DI RKF     T +        +RL P+      Y+  S+ ++ DA  K TG+T W  ++
Sbjct: 41  DIERKFVKVWSTSVGDGQGYLYNRLTPVVDGETIYVAASDGQV-DAISKSTGKTLWSNSV 99

Query: 469 RTLSVIFSNIADDR*PILRKLMIQIQILLQVMGFTKSTGLYILYDKIG 612
               V    + DD       +++   +  +V+   KS G  I  +K+G
Sbjct: 100 DKFVVGGIGVGDD-------ILLLGTVKGEVIALNKSDGELIWTEKVG 140


>UniRef50_A5UKL3 Cluster: Putative uncharacterized protein; n=1;
           Methanobrevibacter smithii ATCC 35061|Rep: Putative
           uncharacterized protein - Methanobrevibacter smithii
           (strain PS / ATCC 35061 / DSM 861)
          Length = 357

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +2

Query: 80  KIQKLDNYNSSRYERNIFLNFSRTFDSLIDDVMKFKDMFQYIINDE 217
           KI +L  Y  + Y +N  L+ S  F +++D+V KF +   ++++DE
Sbjct: 42  KIIQLLMYLIALYSQNNMLSSSGYFKNILDEVSKFNNYLNHLVDDE 87


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,268,153
Number of Sequences: 1657284
Number of extensions: 9744150
Number of successful extensions: 27784
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27775
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)