Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0185
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   1.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   1.7  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    22   4.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   9.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   9.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   9.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   9.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   9.1  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    21   9.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   9.1  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 328 LNSINTSSVDRLVPLNVILEDYIKCSNNRIIDASCKDTG 444
           + S+  + V  L P  + ++     S++RI+D  CK  G
Sbjct: 4   MQSVEGAMVHHLEPHRMQIKPQSPSSSSRILDIPCKVCG 42


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 328 LNSINTSSVDRLVPLNVILEDYIKCSNNRIIDASCKDTG 444
           + S+  + V  L P  + ++     S++RI+D  CK  G
Sbjct: 4   MQSVEGAMVHHLEPHRMQIKPQSPSSSSRILDIPCKVCG 42


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 331 NSINTSSVDRLVPLNVILEDYIKCSNNRIIDASCKDTGR 447
           N  +   VD+++  + +L +YIKC  +   +  C   GR
Sbjct: 25  NKYDNVDVDKILNNDRVLTNYIKCLMD---EGPCTSEGR 60


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 20  LCLDEELQAEWVQYLEMKRGKIQKLDNYNSSRY 118
           LCL E     W Q   MK  K  K+ + N   Y
Sbjct: 257 LCLTERQIKIWFQNRRMKWKKEHKMASMNIVPY 289


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 20  LCLDEELQAEWVQYLEMKRGKIQKLDNYNSSRY 118
           LCL E     W Q   MK  K  K+ + N   Y
Sbjct: 257 LCLTERQIKIWFQNRRMKWKKEHKMASMNIVPY 289


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 20  LCLDEELQAEWVQYLEMKRGKIQKLDNYNSSRY 118
           LCL E     W Q   MK  K  K+ + N   Y
Sbjct: 257 LCLTERQIKIWFQNRRMKWKKEHKMASMNIVPY 289


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 20  LCLDEELQAEWVQYLEMKRGKIQKLDNYNSSRY 118
           LCL E     W Q   MK  K  K+ + N   Y
Sbjct: 213 LCLTERQIKIWFQNRRMKWKKEHKMASMNIVPY 245


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 20  LCLDEELQAEWVQYLEMKRGKIQKLDNYNSSRY 118
           LCL E     W Q   MK  K  K+ + N   Y
Sbjct: 257 LCLTERQIKIWFQNRRMKWKKEHKMASMNIVPY 289


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 20  LCLDEELQAEWVQYLEMKRGKIQKLDNYNSSRY 118
           LCL E     W Q   MK  K  K+ + N   Y
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKEHKMASMNIVPY 77


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 20  LCLDEELQAEWVQYLEMKRGKIQKLDNYNSSRY 118
           LCL E     W Q   MK  K  K+ + N   Y
Sbjct: 257 LCLTERQIKIWFQNRRMKWKKEHKMASMNIVPY 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,903
Number of Sequences: 336
Number of extensions: 2608
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)