Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0185
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    28   1.4  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    27   2.4  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    27   2.4  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    26   5.6  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   5.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   9.9  
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    25   9.9  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   9.9  

>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 26   LDEELQAEWVQYLEMKRGKIQKLDNYNSSRYERNIFLNFSRTFDSL 163
            +DE++Q    ++L++  G  Q L  + + +    + LN+ R  D+L
Sbjct: 1023 IDEKIQYSMSRFLDVVTGSSQVLQKFKTKKRSTFLTLNYPRIEDAL 1068


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
            catalytic subunit|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 312  VEEFPKYVIPFCSVQRIESDLKEDMKLKCSVPSSLI 205
            + E P+ V  F SV  I+  L++D+K+ C  PS+ +
Sbjct: 923  INELPQSVAFFSSVD-IDHVLRKDVKMDCVTPSNKV 957


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +1

Query: 286 DDIFRKFFNKLDTVLNSINTSSV 354
           DD+++KF ++ +T+LNS+  + V
Sbjct: 134 DDLYKKFSSEKETLLNSVKRAKV 156


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 294 ISEILQQIRHSPELYQHIVC 353
           +  +LQ + HSPEL Q I C
Sbjct: 177 VRSLLQSMGHSPELVQCITC 196



 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 340 NTSSVDRLVPLNVILEDYIKCSNNRIIDASCKDTGRT 450
           +TS  +R   L  + E+ I+ + ++  + +CKDTG+T
Sbjct: 43  STSFAERRNFLKALKENIIR-NQDKYAEIACKDTGKT 78


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 514 PILRKLMIQIQILLQVMGFTKSTGLYILYD 603
           P  ++L  Q+ + + ++   ++ GLY+LYD
Sbjct: 587 PTFKQLRCQLSLFILLLTRLENMGLYLLYD 616


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 98   NYNSSRYERNIFLNFSRTFDSLI 166
            NY S+RY  N FL FS  F SL+
Sbjct: 1495 NYASNRYSFNFFL-FSVCFQSLL 1516


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 447 SACVLARRVYDPVVTALDVIFQD 379
           SAC LA++V+D  ++ LD + ++
Sbjct: 191 SACHLAKQVFDEAISELDSLSEE 213


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 216 SSLIIYWNMSLNFMTSSINESKVLEKFK 133
           S LI ++N + NF+  SI  ++VLE+ K
Sbjct: 195 SRLIEHYNKNPNFVQPSIFHTQVLEELK 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,529
Number of Sequences: 5004
Number of extensions: 46476
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)