Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0185
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_58441| Best HMM Match : Lipoxygenase (HMM E-Value=3.4e-15)          31   1.1  
SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)                         31   1.1  
SB_3500| Best HMM Match : MRG (HMM E-Value=1.5)                        30   1.5  
SB_6461| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          29   4.5  
SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 21/86 (24%), Positives = 36/86 (41%)
 Frame = +1

Query: 247 FKIALDSLNTTERDDIFRKFFNKLDTVLNSINTSSVDRLVPLNVILEDYIKCSNNRIIDA 426
           F+  L ++N  E   + R +F + D ++ +        L P+ V+L DY   SNN +   
Sbjct: 283 FENLLSAVNNVEDQQLLRHWFRRDDNIVPAEYL-----LQPITVLLPDYRNYSNNEL--- 334

Query: 427 SCKDTGRTAWMYTIRTLSVIFSNIAD 504
             +      W      + V+F   AD
Sbjct: 335 --RKKASAEWWAAFERMQVVFREAAD 358


>SB_58441| Best HMM Match : Lipoxygenase (HMM E-Value=3.4e-15)
          Length = 621

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -1

Query: 300 PKYVIPFCSVQRIESDLKEDMKLKCSVPSSLIIYWNMSLN 181
           P+YV P CS++R     K+  + K + PS+ + Y  ++++
Sbjct: 34  PQYVTPACSIKRKAGLYKQQKEFKLNAPSAAMPYARLAVS 73


>SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1444

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 316 LDTVLNSINTSSVDRLVPLNVILEDYIKCSNNRIIDASCKDTGRTAW 456
           + ++++  N +S     P+  + +  +KC+  R + A+CKDT    W
Sbjct: 213 MGSLVDHRNKASRRAPAPVCPVCDKAVKCNQKRYVCATCKDTTHARW 259


>SB_3500| Best HMM Match : MRG (HMM E-Value=1.5)
          Length = 277

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 98  NYNSSRYERNIFLNFSRTFDSLIDDVMKFKDMFQYIINDE 217
           NY   +Y     L F+ T DSL  ++ + +DM+QY +NDE
Sbjct: 210 NYTKEKYGHKARLLFTDT-DSLTYEIEE-EDMYQYFLNDE 247


>SB_6461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 331 NSINTSSVDRLVPLNVILEDYIKCSNNRIIDASCKDTGRTAWMY 462
           N +N   VD    LNV+  DY    N   +D + K T  T WM+
Sbjct: 126 NDLNVLRVDYANDLNVLRVDYTNALNVYRVDYTNKLTILTIWMF 169


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +1

Query: 250 KIALDSLNTTERDDIFRKFFNKLDTVLNSINTSSV--DRLVPLNVILED---YIKCSNNR 414
           KI +     T  D+IFRK    LD +L+ +N  S+     +P N  ++D   ++K  + R
Sbjct: 755 KIQISLSKLTIVDEIFRKVLGALDRILDIVNRISIHLPHNLPPNFQIKDLLRWLKSVSVR 814

Query: 415 IIDASCKD 438
           + D+   D
Sbjct: 815 LQDSKIAD 822


>SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 259 LDSLNTTERDDIFRKFFNKLDTVLNSINTSSVDRLVPLNVILEDYIK 399
           +D   T  R D   K+ N++   L S+ +  +  ++PL VIL  Y+K
Sbjct: 184 MDLEETAWRKDCLTKWPNEVSKKLYSVTSMVLFYVIPLAVILMTYLK 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,369,291
Number of Sequences: 59808
Number of extensions: 316245
Number of successful extensions: 781
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)