Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0185
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79753-1|CAB02086.1|  249|Caenorhabditis elegans Hypothetical pr...    31   0.56 
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z83233-2|CAB05761.1|  338|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF273797-2|AAG15146.1|  338|Caenorhabditis elegans nuclear recep...    29   2.3  
AF025452-9|AAB70946.1|  348|Caenorhabditis elegans Hypothetical ...    28   5.2  
Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AC006720-5|AAF60449.2|  297|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z79753-1|CAB02086.1|  249|Caenorhabditis elegans Hypothetical
           protein F20G2.1 protein.
          Length = 249

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
 Frame = +1

Query: 334 SINTSSVDRLVPLNVILEDYIKCSNNRIIDASCKDTGRTAWMYTIRTLSVIFSNIADDR* 513
           SI  +  +R + L  +L+ +IK  + +II  +C+D      + +I+   V    +  D  
Sbjct: 5   SILITGANRGIGLG-LLKQFIKNKDVQIIIGTCRDPSNATELNSIKDTRVHILQLDIDCD 63

Query: 514 PILRKLMIQIQILLQVMGFT---KSTGLYILYDKIGD 615
             +RKL  +++ L+   G T    + G+++ YD  G+
Sbjct: 64  DSIRKLGAEVEKLVGEDGLTVLINNAGIFVPYDIDGE 100


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -1

Query: 282 FCSVQRIESDLKEDMKLKCSVPSSLIIYWNMSLNFMTSSINESKVLEK 139
           +C+   ++SD    +KL+   P+SL +YW    N++T + ++  +  K
Sbjct: 220 WCAFATLDSDEANILKLRSRTPNSLTVYW--PANWLTKTTSKFTIKAK 265


>Z83233-2|CAB05761.1|  338|Caenorhabditis elegans Hypothetical
           protein K06B4.2 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 262 DSLNTTERDDIF----RKFFNKLDTVLNSINTSSVDRLVPLNVILEDYI 396
           D L T   DD+F    R  F+K   ++N I    V RL+ + +  E+Y+
Sbjct: 195 DCLMTPSGDDLFSPAVRGLFDKTPEIINRILCQVVGRLMEIKITYEEYL 243


>AF273797-2|AAG15146.1|  338|Caenorhabditis elegans nuclear receptor
           NHR-52 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 262 DSLNTTERDDIF----RKFFNKLDTVLNSINTSSVDRLVPLNVILEDYI 396
           D L T   DD+F    R  F+K   ++N I    V RL+ + +  E+Y+
Sbjct: 195 DCLMTPSGDDLFSPAVRGLFDKTPEIINRILCQVVGRLMEIKITYEEYL 243


>AF025452-9|AAB70946.1|  348|Caenorhabditis elegans Hypothetical
           protein B0454.9 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 226 TLKFHVFFKIALDSLNTTERDDIFRKFFNKLDT 324
           T    + FK A DSL    RD I RK  N++DT
Sbjct: 100 TKMVQMVFKTAKDSLRNRLRDAISRKGLNEVDT 132


>Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical
           protein F10F2.7 protein.
          Length = 628

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 107 SSRYERNIFLNFSRTFDSLIDDVMKFKDMFQ 199
           S+RY+++ F NFSR    LI D    ++ F+
Sbjct: 11  SNRYKKSEFNNFSRVNQKLISDSSHLQNAFE 41


>AC006720-5|AAF60449.2|  297|Caenorhabditis elegans Hypothetical
           protein Y17G9B.8 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 204 IYWNMSLNFMTSSINESKVLEKFKK 130
           ++  +S+  +T  INE +VL+KF K
Sbjct: 74  VFLQISIKILTKEINEDQVLDKFLK 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,293,267
Number of Sequences: 27780
Number of extensions: 249080
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)