Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0185
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   3.5  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   3.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.0  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 352 VDRLVPLNVILEDYIKCSNNRIIDASCKDTGR 447
           +DR++    IL +YIKC    + +  C + GR
Sbjct: 30  IDRILQNGRILTNYIKC---MLDEGPCTNEGR 58


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 352 VDRLVPLNVILEDYIKCSNNRIIDASCKDTGR 447
           +DR++    IL +YIKC    + +  C + GR
Sbjct: 30  IDRILQNGRILTNYIKC---MLDEGPCTNEGR 58


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -3

Query: 640 EFRENP*RNRLSYRIECKAQCSS*SPSLVTKFESGSLTSLK 518
           E  E P    L +R EC+ + +   P + +  E+ +  ++K
Sbjct: 48  EIIEQPASKALRFRYECEGRSAGSIPGVNSTSENKTFPTIK 88


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -3

Query: 640 EFRENP*RNRLSYRIECKAQCSS*SPSLVTKFESGSLTSLK 518
           E  E P    L +R EC+ + +   P + +  E+ +  ++K
Sbjct: 48  EIIEQPASKALRFRYECEGRSAGSIPGVNSTSENKTFPTIK 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,534
Number of Sequences: 438
Number of extensions: 3084
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)