Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0185
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78220.1 68414.m09115 14-3-3 protein GF14 pi (GRF13) similar ...    29   3.7  
At1g03830.1 68414.m00364 guanylate-binding family protein contai...    29   3.7  
At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containi...    28   4.9  
At2g29760.1 68415.m03616 pentatricopeptide (PPR) repeat-containi...    28   4.9  
At2g40230.1 68415.m04947 transferase family protein similar to t...    28   6.5  

>At1g78220.1 68414.m09115 14-3-3 protein GF14 pi (GRF13) similar to
           GF14 epsilon isoform GI:1022778 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00244 14-3-3
           proteins
          Length = 245

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 471 SYRVHPS-GSACVLARRVYDPVVTALD 394
           +Y +H S  SAC L ++ YD  +T LD
Sbjct: 183 NYEIHKSIESACKLVKKAYDEAITELD 209


>At1g03830.1 68414.m00364 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 991

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +2

Query: 32  EELQAEWVQYLEMKRGKIQKLDNYNSSRYERNIFLN--FSRTFDSLIDDVMKFKDMFQYI 205
           +EL +E  + L++++  ++   N    + E    +N  + + ++S IDD+ K  D F+  
Sbjct: 398 DELMSENSK-LKLQQQSLESTMNLLKKQLEGREKMNKEYQKRYESAIDDICKLSDQFKNR 456

Query: 206 IND 214
           IND
Sbjct: 457 IND 459


>At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 871

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = -1

Query: 255 DLKEDMKLKCSVPSSLIIYWNMSLNFMTSSINESKVLEKFKKMFXXXXXXXXXXSFCILP 76
           DLKE  ++   V     ++WN+ +N +  S + S  +  FKKM             C+  
Sbjct: 144 DLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSK 203

Query: 75  RFIS 64
            F S
Sbjct: 204 SFSS 207


>At2g29760.1 68415.m03616 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 738

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 255 DLKEDMKLKCSVPSSLIIYWNMSLNFMTSSINESKVLEKFKKM 127
           DL    K+  ++    ++ WN  +N      +  K LE FKKM
Sbjct: 181 DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKM 223


>At2g40230.1 68415.m04947 transferase family protein similar to
           taxadienol acetyl transferase from Taxus cuspidata
           [gi:6978038]; contains Pfam transferase family domain
           PF002458
          Length = 433

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 283 RDDIFRKFFNKLDTVLNSINTSSVDRLVPLNVILE 387
           RD +    FN++  +   +N  + +RLVP +V+ E
Sbjct: 204 RDSLSHPEFNRVPDLCGFVNRFNAERLVPTSVVFE 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,328,143
Number of Sequences: 28952
Number of extensions: 223721
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)