Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0184
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.24 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   5.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -2

Query: 140 ISCE-AGLAHPGAIVYY 93
           I+CE  GL HPGA+V++
Sbjct: 877 INCEIGGLQHPGAVVWF 893


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 347  LRVAPEEHPVLLTEAPLNPKANREKM 424
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 111 GMCKAGFAGD 140
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 246 YVPHLLHKSPSVPYRPSRP 190
           Y PH  H S   P+R S P
Sbjct: 316 YHPHQHHPSQYHPHRGSSP 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,922
Number of Sequences: 438
Number of extensions: 3104
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)