Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0183
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81120-3|CAB03345.2|  135|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z70780-13|CAD18872.2|  368|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z81137-2|CAB03465.1|  386|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 209 ICQLDEYCSPETNRC 253
           IC LDEYC+ ETN C
Sbjct: 444 ICDLDEYCNGETNDC 458


>Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 209 ICQLDEYCSPETNRC 253
           IC LDEYC+ ETN C
Sbjct: 444 ICDLDEYCNGETNDC 458


>Z81120-3|CAB03345.2|  135|Caenorhabditis elegans Hypothetical
           protein T12D8.5 protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +3

Query: 501 KAKFQPAKNRVKQYPNDLTHHNPHAETPKPKPELKLEIRNPDPLRRTNQPFNVK 662
           K + +  K  + +    L  HN H + P+  PE  +E     P+R+ ++  ++K
Sbjct: 59  KERVELLKQEIDRAEQLLAEHNKHVDAPEIAPETYMEAGQVPPMRKASRYDHLK 112


>Z70780-13|CAD18872.2|  368|Caenorhabditis elegans Hypothetical
           protein F46B6.3b protein.
          Length = 368

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 484 VSWRYLKQSSSQPRTA*SSTLMT*RITTL-MPKRRNRNPN 600
           V+ +  K++ ++PRTA SST +  R TT   PKR +  PN
Sbjct: 328 VTTKLNKETDTRPRTAPSSTKLPTRATTSNHPKRPSTAPN 367


>Z81137-2|CAB03465.1|  386|Caenorhabditis elegans Hypothetical
           protein W02D9.3 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 477 RKSLLEIFKAKFQPAKNRVKQYPNDLTHHNPHAETPKPKPELKLEIRNPDP 629
           +K   +   ++   +KN  K+   D     P+ + P PKP +   + +P+P
Sbjct: 202 QKKRAKFLSSQSNGSKNAKKRRQADSDDDTPNVQIPFPKPSVFCPLLSPEP 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,678,445
Number of Sequences: 27780
Number of extensions: 326121
Number of successful extensions: 900
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)