Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0183
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g14920.1 68415.m01697 sulfotransferase family protein similar... 32 0.31
At3g02120.1 68416.m00178 hydroxyproline-rich glycoprotein family... 30 1.6
At5g40950.1 68418.m04975 50S ribosomal protein L27, chloroplast,... 29 2.2
At3g11310.1 68416.m01375 hypothetical protein 29 2.9
At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein, p... 28 5.0
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 28 6.6
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB) 27 8.8
At2g19220.1 68415.m02243 hypothetical protein 27 8.8
>At2g14920.1 68415.m01697 sulfotransferase family protein similar to
steroid sulfotransferase from [Brassica napus]
GI:3420008, GI:3420004; contains Pfam profile PF00685:
Sulfotransferase domain
Length = 333
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 504 AKFQPAKNRVKQYPNDLTHHNPHAETPKPKPELKLEIRNPD 626
A Q +K+ ++ + + L HHNPH P + +L L+ PD
Sbjct: 88 ALVQRSKHSLEDHQHPLLHHNPHEIVPNLELDLYLKSSKPD 128
>At3g02120.1 68416.m00178 hydroxyproline-rich glycoprotein family
protein
Length = 126
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 552 LTHHNPHAETPKPKPELKLEIRNPDPLRRTNQP 650
+T NP + P+P PE + +P P TN+P
Sbjct: 21 ITTSNPESSPPRPFPESSRKHDSPPPRASTNEP 53
>At5g40950.1 68418.m04975 50S ribosomal protein L27, chloroplast,
putative (RPL27) identical to SP|Q9FLN4 ribosomal
protein L27, chloroplast precursor {Arabidopsis
thaliana}; similar to SP|P30155 50S ribosomal protein
L27, chloroplast precursor (CL27) {Nicotiana tabacum}
Length = 198
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +3
Query: 507 KFQPAKNRVKQYPNDLTHHNPHAETPKPKPELKLEIRNPDPLRRTNQPFNV 659
KF P + ++ YP ++ NP++ + + +L+ R RR N + +
Sbjct: 128 KFGPDRKKISVYPREIVPENPNSYRARKRENFRLQ-REKKKARRENYSYTL 177
>At3g11310.1 68416.m01375 hypothetical protein
Length = 539
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 495 IFKAKFQPAKNRVKQYPNDLTHHNPHAETPKPKPELKL 608
IFK +P K ++ Y + HH+ + P P L +
Sbjct: 298 IFKGHVEPGKTALRPYRKRVNHHSEAPQHPAPSSALNI 335
>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 341
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 516 PAKNRVKQYPNDLTHHNPHAETPKPKPELKLEIRNPDP 629
P N V QYP HH P P P + L+ P P
Sbjct: 59 PNPNPVYQYPASYYHHPPPGAMPLPPYDHHLQHHPPHP 96
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 516 PAKNRVKQYPNDLTHHNPHAETPKPKPELKLEIRNPDP 629
P N V QYP HH P P P + L+ P P
Sbjct: 59 PNPNPVYQYPASYYHHPPPGAMPLPPYDHHLQHHPPHP 96
>At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein,
putative (DRT100) similar to
DNA-damage-repair/toleration protein DRT100 [Precursor]
SWISS-PROT:Q00874, NCBI_gi:5701788; contains multiple
LRR repeats Pfam profile: PF00560
Length = 372
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 137 RIPTSLSSLKHRVHFRRNRHKHCGMILSKFEF 42
RIP SLSS K H + +K CG I + F F
Sbjct: 318 RIPDSLSSAKFVGHLDISHNKLCGRIPTGFPF 349
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 537 QYPNDLTHHNPHAETP-KPKPELKLEIRNPDPLRRTNQPFNVKDLKT 674
QY N L NP + P+L+ ++NPD LR+ + P ++ + T
Sbjct: 405 QYMNQLMSLNPQLRSMLDSNPQLREMMQNPDFLRQFSSPEMMQQMMT 451
>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
Length = 178
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 51 FRKYHTTVLVSVPAKMYTVL*RRERCRDSCVS*CSLASPPLK 176
+++Y T L +MYT + R R R C+ A+ P K
Sbjct: 93 YKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAK 134
>At2g19220.1 68415.m02243 hypothetical protein
Length = 439
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 486 LLEIFKAKFQPAKNRVKQYPNDLTHHNPHAETPK 587
L IFK + +P K + ++Y + H H+E+P+
Sbjct: 282 LATIFKGRIEPGKTKTRRYRKRVIDH--HSESPQ 313
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,430
Number of Sequences: 28952
Number of extensions: 301201
Number of successful extensions: 881
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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