Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0182
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    27   3.0  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   6.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   9.1  

>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 231 SAENGMLIFRDVFPVQLAPLLH*YGRSRTHYR 326
           S + G  +  DV P    PL+H YG S T Y+
Sbjct: 297 SRKGGARVELDVVPGTSVPLVHDYGASGTGYQ 328


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 113 VSLKLHWYKILITYSKFSKRFWITNF*FLSD 21
           +SLKL+   IL  +   S  FWI +  F +D
Sbjct: 644 LSLKLYHLSILYFFELISSIFWIAHHVFAND 674


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 433  HYNENNSSKFE*ILSVITLPRKNCSAKQYKIVFKLLIINKD 555
            HYN+N   + + IL      + N SA+   I  K+  + KD
Sbjct: 1086 HYNKNEREESDTILKKRLAKKNNVSAESIIIEPKIRFLEKD 1126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,387
Number of Sequences: 5004
Number of extensions: 53894
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)