Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0182
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30514| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=1.2)              29   4.1  
SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                27   9.6  

>SB_30514| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=1.2)
          Length = 249

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 303 HTNARGGPVVQETHPGKSTYRSPQIIGIYTYAQ 205
           H  + GGP + + H G  TY   + + IYT A+
Sbjct: 63  HGGSSGGPTILDLHSGALTY-GEKFVNIYTLAK 94


>SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 280

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 64  FQSGFGSLISNFYLIISNLH 5
           +++GFGSL S F+L + N+H
Sbjct: 56  YETGFGSLSSEFWLGLINIH 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,360,987
Number of Sequences: 59808
Number of extensions: 384946
Number of successful extensions: 756
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)