Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0182
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05785.2 68414.m00604 Got1-like family protein contains Pfam ...    28   4.5  
At1g05785.1 68414.m00603 Got1-like family protein contains Pfam ...    28   4.5  
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat...    28   5.9  
At1g22010.1 68414.m02753 hypothetical protein                          27   7.8  

>At1g05785.2 68414.m00604 Got1-like family protein contains Pfam
           PF04178: Got1-like family profile; contains 4
           transmembrane domains;
          Length = 135

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 199 SRLRICVNANNLRRTVC*FSGMCFLY-NWP 285
           S  R+  N NNLR T+C   G+  ++  WP
Sbjct: 55  STWRVFTNVNNLRGTICFVLGLFLIFVRWP 84


>At1g05785.1 68414.m00603 Got1-like family protein contains Pfam
           PF04178: Got1-like family profile; contains 4
           transmembrane domains;
          Length = 135

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 199 SRLRICVNANNLRRTVC*FSGMCFLY-NWP 285
           S  R+  N NNLR T+C   G+  ++  WP
Sbjct: 55  STWRVFTNVNNLRGTICFVLGLFLIFVRWP 84


>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
            catalytic subunit, putative similar to SP|Q07864 DNA
            polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
            polymerase II subunit A) {Homo sapiens}; contains Pfam
            profiles: PF03175 DNA polymerase type B, organellar and
            viral, PF00136 DNA polymerase family B, PF03104 DNA
            polymerase family B, exonuclease domain
          Length = 2271

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/87 (24%), Positives = 36/87 (41%)
 Frame = -1

Query: 305  PILMQEGGQLYRKHIPENQHTVLRRLLAFTHMRRREYI*NPFIFNINLKDGVLHNDILSK 126
            P   +EG  + +++   N    L  L  F  ++RR  +    +F   L D  LH   L +
Sbjct: 913  PASKEEGILIKKRYAVFNHDGTLAELKGF-EIKRRGELKLIKVFQAELFDKFLHGSTLEE 971

Query: 125  LYRLVSLKLHWYKILITYSKFSKRFWI 45
             Y  V+     +  L+   + S  FW+
Sbjct: 972  CYSAVAAVADRWLDLLDVCEISCFFWV 998


>At1g22010.1 68414.m02753 hypothetical protein
          Length = 163

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 160 RMVSFTMIYYRNYIDSYL*NYIGIKF*SR 74
           R+V+  M+Y  NY D  L  YI  KF SR
Sbjct: 87  RLVTHLMLYLHNYQDCALSIYITFKFISR 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,699,400
Number of Sequences: 28952
Number of extensions: 260659
Number of successful extensions: 474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)