Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0181
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    57   2e-09
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    56   4e-09
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    38   0.002
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    28   1.2  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    27   3.6  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    26   6.3  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   8.4  

>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
 Frame = +3

Query: 93  FKRLMH--KRL-PISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYATLAGLEPQVNLH 263
           FK  +H  K L PI +WLP YN    + DLIAGITVG  V+PQ ++YA +A L  +  L+
Sbjct: 96  FKNFLHYLKSLFPIIEWLPNYNPYWLINDLIAGITVGCVVVPQGMSYAKVATLPSEYGLY 155

Query: 264 NYY 272
           + +
Sbjct: 156 SSF 158


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
 Frame = +3

Query: 99  RLMH---KRLPISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYATLAGLEPQVNLHNY 269
           RL+H      PI  WLP YN +  V D IAGITVG  V+PQ ++YA +A L  Q  L++ 
Sbjct: 111 RLLHYLRSLFPIMNWLPRYNWNWLVYDFIAGITVGCVVVPQGMSYAKVATLPAQYGLYSS 170

Query: 270 Y 272
           +
Sbjct: 171 F 171


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +3

Query: 45  ANMSSPSKHRSKKQSK--FKRLMHKRLPISKWLPEYNSSKAVADLIAGITVGLTVIPQAL 218
           A  SS  K  +  Q K    R ++  +P+  WLP Y+    + D++AG +     +P AL
Sbjct: 37  ARRSSTWKRANIPQQKPSLVRRINYYIPVLHWLPNYSLRNIIWDVLAGCSTACLSVPIAL 96

Query: 219 AYA-TLAGLEP 248
           ++A T  G+ P
Sbjct: 97  SFAQTFLGVPP 107


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 507 HRHKSTFENSTSCVYGLRQSPDPVCTNFKIQTT 605
           +R+   + NST  VY     P+ V  NF +Q T
Sbjct: 231 YRYLRLYPNSTCIVYQSSNEPNDVVRNFSVQNT 263


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 241 SPANVAYAKAWGMTVS-PTVIPAIKSAT 161
           SP N  YAK+W  T S P + P +K+ +
Sbjct: 283 SPINPYYAKSWNHTASAPLLPPGLKNGS 310


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 111 CALTS*ISIAFWSDVSMETTYLHPDD 34
           C L + +SI +WS VS + + L P D
Sbjct: 27  CPLETIVSILYWSIVSYDRSLLIPKD 52


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +3

Query: 51  MSSPSKHRSKKQSKFKRLMHKRLPISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYAT 230
           +SS  K++ K  +  +R  H  LP+   +  YNS+     L +    G++V  + L Y +
Sbjct: 782 LSSLGKNKEKYDALLERSSHGVLPVQSKMLLYNSNHISCPLSS--IKGVSVNGKRLVYTS 839

Query: 231 LAGLE 245
            A +E
Sbjct: 840 RALVE 844


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,619
Number of Sequences: 5004
Number of extensions: 61326
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)