Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0181
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0015 + 4965894-4966214,4966339-4966387,4966504-4966890,496... 53 2e-07
09_02_0018 + 3016137-3016186,3016529-3016776,3018717-3018811,302... 50 2e-06
03_01_0424 - 3253179-3253367,3253480-3253556,3253654-3253739,325... 50 3e-06
01_06_0517 + 29981537-29981927,29982024-29982231,29982373-299825... 50 3e-06
03_02_0012 - 4914223-4914468,4914511-4914587,4914671-4914732,491... 47 1e-05
10_08_0031 + 14281681-14282023,14282105-14282484,14282581-142826... 47 2e-05
08_02_0622 + 19422001-19422330,19422411-19422459,19422552-194227... 47 2e-05
01_05_0557 + 23243507-23243855,23243952-23244331,23244866-232449... 46 2e-05
03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495... 43 2e-04
03_02_0013 - 4921925-4922077,4922176-4922252,4922360-4922445,492... 43 2e-04
01_05_0148 + 18609853-18610058,18610347-18612669 30 2.2
11_06_0311 - 22279202-22279690,22279976-22280103,22281249-222813... 29 5.0
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148... 29 5.0
02_05_1289 - 35470076-35470243,35471032-35471108,35471935-354719... 29 5.0
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 29 5.0
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 28 6.6
09_04_0533 + 18391167-18391363,18392452-18392689 28 6.6
>03_02_0015 +
4965894-4966214,4966339-4966387,4966504-4966890,
4966976-4967034,4967128-4967241,4967344-4967460,
4967558-4967684,4967764-4968050,4968148-4968338,
4968801-4968886,4968975-4969051,4969161-4969304
Length = 652
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +3
Query: 54 SSPSKHRSKKQSKFKRL---MHKRLPISKWLPEYNSSKAVADLIAGITVGLTVIPQALAY 224
S R K Q + ++L + P+ +W +Y +K DLIAG+T+ VIPQ + Y
Sbjct: 52 SDEPMRRYKDQPRSRKLWLALQHVFPVFEWGRQYTLAKFKGDLIAGLTLASLVIPQDIGY 111
Query: 225 ATLAGLEPQVNLHNYY 272
A LA L P++ LH+ +
Sbjct: 112 AKLANLPPEIGLHSSF 127
>09_02_0018 +
3016137-3016186,3016529-3016776,3018717-3018811,
3020025-3020330,3021288-3021336,3021436-3021637,
3023364-3023532,3023605-3023634,3023742-3023807,
3025313-3025378,3029404-3029464,3029592-3029719,
3030716-3030757,3031074-3031190,3031280-3031339
Length = 562
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +3
Query: 117 LPISKWLPEYNSSKAV-ADLIAGITVGLTVIPQALAYATLAGLEPQVNLH 263
LP W+ Y + + ADL AGITVG+ ++PQA++YA LAGL P L+
Sbjct: 201 LPCLSWMRTYRLKEDLQADLAAGITVGVMLVPQAMSYAKLAGLHPIYGLY 250
>03_01_0424 -
3253179-3253367,3253480-3253556,3253654-3253739,
3253844-3254321,3254393-3254519,3254624-3254740,
3254853-3254966,3256650-3256715,3257738-3258117,
3258217-3258496
Length = 637
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +3
Query: 120 PISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYATLAGLEPQVNLHNYY 272
P +W P Y +DLIAGIT+ IPQ ++YA LA L P + L++ +
Sbjct: 47 PFMEWAPSYTLGTLKSDLIAGITIASLAIPQGISYAKLANLPPVLGLYSSF 97
>01_06_0517 +
29981537-29981927,29982024-29982231,29982373-29982544,
29984468-29984533,29984658-29984771,29984880-29984996,
29985097-29985223,29985317-29985603,29985701-29985891,
29985981-29986063,29986175-29986251,29986729-29986896
Length = 666
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +3
Query: 117 LPISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYATLAGLEPQVNLHNYY 272
+P W+P Y K DL+AGIT+ IPQ ++YA LA L P + L++ +
Sbjct: 83 VPALDWVPRYGLDKFKFDLLAGITIASLAIPQGISYARLANLPPIIGLYSSF 134
>03_02_0012 -
4914223-4914468,4914511-4914587,4914671-4914732,
4914825-4915018,4915153-4915439,4915520-4915646,
4916216-4916446,4917210-4917384,4917461-4917668,
4917745-4917793,4918016-4918300
Length = 646
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +3
Query: 120 PISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYATLAGLEPQVNLH 263
PI W YN +DL+AG+T+ IPQ++ YATLA L+PQ L+
Sbjct: 65 PILDWWKTYNLKFFRSDLMAGLTLASLSIPQSIGYATLAKLDPQYGLY 112
>10_08_0031 +
14281681-14282023,14282105-14282484,14282581-14282646,
14284078-14284191,14284302-14284418,14284526-14284652,
14284779-14285065,14285200-14285390,14285504-14285589,
14285718-14285794,14285902-14286090
Length = 658
Score = 46.8 bits (106), Expect = 2e-05
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +3
Query: 120 PISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYATLAGLEPQVNLHNYY 272
P +WLP Y+ + +D++AG+T+ +PQ ++YA L L P + L++ +
Sbjct: 68 PFLEWLPSYSLAALWSDVVAGVTIASLAVPQGISYAKLGDLPPIMGLYSSF 118
>08_02_0622 +
19422001-19422330,19422411-19422459,19422552-19422759,
19422832-19423006,19423101-19423166,19423264-19423377,
19423473-19423589,19423677-19423803,19423893-19424179,
19424279-19424469,19424571-19424656,19424749-19424825,
19425057-19425200
Length = 656
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +3
Query: 87 SKFKRLMHKRLPISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYATLAGLEPQVNLHN 266
+KF + PI +W YN K DLIAG+T+ IPQ + Y+ LA L+ Q L++
Sbjct: 69 AKFMMALQFLFPIFEWGRCYNLRKFKGDLIAGLTIASLCIPQDIGYSKLANLDAQYGLYS 128
Query: 267 YY 272
+
Sbjct: 129 SF 130
>01_05_0557 +
23243507-23243855,23243952-23244331,23244866-23244931,
23245023-23245136,23245226-23245342,23245444-23245570,
23245660-23246486
Length = 659
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/52 (36%), Positives = 33/52 (63%)
Frame = +3
Query: 117 LPISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYATLAGLEPQVNLHNYY 272
+P W Y+++ DL+AG+T+ IPQ ++YATLAG+ P + L++ +
Sbjct: 69 VPALDWGAGYSAASFWYDLLAGVTIASLSIPQGISYATLAGIPPVIGLYSCF 120
>03_02_0014 +
4955759-4956106,4956229-4956277,4956372-4956579,
4956700-4956874,4956981-4957046,4957150-4957263,
4957366-4957482,4957589-4957715,4957826-4958112,
4958209-4958399,4958937-4959022,4959117-4959193,
4959330-4959473
Length = 662
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 120 PISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYATLAGLEPQVNLHNYY 272
P+ W Y K DL++G+T+ IPQ + YA LAGL P L++ +
Sbjct: 86 PVLDWGRHYTFRKFRGDLVSGLTIASLCIPQDIGYAKLAGLLPNYGLYSSF 136
>03_02_0013 -
4921925-4922077,4922176-4922252,4922360-4922445,
4922527-4922720,4922829-4923115,4923219-4923345,
4923586-4923816,4923982-4924047,4925300-4925474,
4925563-4925770,4925886-4925934,4926249-4926578
Length = 660
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +3
Query: 120 PISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYATLAGLEPQVNLH 263
P+ +W YN +D++AG+T+ IPQ++ YA LA L+PQ L+
Sbjct: 80 PVLQWGRTYNFKLFRSDVMAGLTLASLGIPQSIGYANLAKLDPQYGLY 127
>01_05_0148 + 18609853-18610058,18610347-18612669
Length = 842
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = -2
Query: 408 GKKIYYLNKRFPKLLQFRKMEVPFLKFQSDHRLTIKALESVMLLFHNNYVDLPV 247
G+K+ +L + FPKL R ++P LK + + +LE + L+ ++ ++P+
Sbjct: 739 GEKLVFLTRWFPKLKVLRLRDLPNLKRMDIQQGAMVSLERLRLINLSSMEEVPL 792
>11_06_0311 -
22279202-22279690,22279976-22280103,22281249-22281355,
22282799-22282888,22283590-22283660
Length = 294
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = +1
Query: 16 LQELSIVIRVQICRLHRNIAPKSNRNSRG*CTKGFQ---FQNGSQSTTQVKPLQI 171
LQE +I++R QI LH I + N NGS S TQ P I
Sbjct: 140 LQEENIMLRAQILELHNEICARMGNNHLNQSNLAMSQPVANNGSNSATQPVPHHI 194
>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
35714942-35715135,35715237-35716786,35716946-35717049,
35717258-35717399,35717692-35717910
Length = 1535
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +3
Query: 60 PSKHRSKKQSKFKRLMHKRLPISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYATLAG 239
P HR K++K RL + + ++ +S +AGIT L P YA A
Sbjct: 1383 PDWHRMDKEAKDSRLDDVKEDLEDLDEDHENSPIDPPKVAGITPSLAPTPSLKLYAQDAS 1442
Query: 240 -LEPQVNLHNYYEIA 281
+ + + N +E+A
Sbjct: 1443 WRDSSMGVSNDFEVA 1457
>02_05_1289 -
35470076-35470243,35471032-35471108,35471935-35471971,
35472559-35472618,35472693-35472769,35473244-35473364,
35473505-35473597,35473708-35473770,35475195-35475245,
35475384-35475511,35476249-35476343,35476345-35476427,
35476653-35476808,35477046-35477182,35477243-35477252,
35477291-35477380,35477771-35478070,35479054-35479120,
35479382-35479469,35480317-35480373,35480469-35480592
Length = 693
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 39 QGANMSSPSKHRSKKQSKFKRLMHKRLPISKWLPEYNSSKAVA 167
Q N+ P+K + KK+SKF R M P+S W+ E + A+A
Sbjct: 198 QCLNLFGPNKLKEKKESKFLRFMWN--PLS-WVMEAAAIMAIA 237
>02_05_1276 +
35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 45 ANMSSPSKHRSKKQSKFKRLMHKRLPISKWLPEYNSSKAVADLIAGIT 188
A + S S+KQ + + + + + K LP + K A+++AG T
Sbjct: 744 AEIKSMKLENSRKQPEVESMNNSSINFGKGLPNFTMKKPFAEVVAGHT 791
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 460 HCLFLCSYT-FWCEWDSIVIRVHLRIQHHVSM 552
HC++LCS T W SI+ ++H +++ SM
Sbjct: 855 HCIYLCSATNQWNTMSSILSKLHHKMKREKSM 886
>09_04_0533 + 18391167-18391363,18392452-18392689
Length = 144
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 453 IRSGM*YYHQ*CKLLGKKIYYLNKRFPKLLQFR 355
+ SG+ Y+ C LL +I +L RF LLQ +
Sbjct: 77 VHSGLSYFASDCSLLNVQITFLRPRFRLLLQMQ 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,113,597
Number of Sequences: 37544
Number of extensions: 379887
Number of successful extensions: 1243
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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