Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0181
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4412| Best HMM Match : No HMM Matches (HMM E-Value=.)               70   2e-12
SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)                44   2e-04
SB_51836| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_4412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 32/59 (54%), Positives = 41/59 (69%)
 Frame = +3

Query: 96  KRLMHKRLPISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYATLAGLEPQVNLHNYY 272
           K+   KR PI+KWL +YN      DLIAG+TVGL V+PQ LAYA +AGL PQ  L++ +
Sbjct: 377 KKYTKKRFPIAKWLSKYNLHFLQCDLIAGLTVGLMVVPQGLAYALVAGLPPQYGLYSAF 435



 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 31/65 (47%), Positives = 45/65 (69%)
 Frame = +3

Query: 78  KKQSKFKRLMHKRLPISKWLPEYNSSKAVADLIAGITVGLTVIPQALAYATLAGLEPQVN 257
           KK+S  ++ + + LPI+KWLP Y+ +    D+I G+TVGL VIPQ LAYAT+AGL     
Sbjct: 26  KKKSNCRKHIGRYLPITKWLPHYSFNNLQCDMIGGLTVGLMVIPQGLAYATIAGLPTVYG 85

Query: 258 LHNYY 272
           L++ +
Sbjct: 86  LYSAF 90


>SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +3

Query: 105 MHKRLPISKWLPEYNSSKA-VADLIAGITVGLTVIPQALAYATL 233
           + K  PI +WLP+YN  K  VADL  G+TVG+  IPQ L  A +
Sbjct: 69  LEKLFPIVQWLPKYNFRKEFVADLTGGMTVGVMHIPQGLYTALI 112


>SB_51836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 354 KMEVPFLK--FQSDHRLTIKALESVMLLFHNNYVDLPVVLARPTW 226
           K+++ FL+    +  R    A+E    L+ + Y  L VVL RP W
Sbjct: 30  KLDIEFLQPGGSTSSRAAATAVELQFALYESYYNSLAVVLQRPDW 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,784,066
Number of Sequences: 59808
Number of extensions: 468530
Number of successful extensions: 959
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)