Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0180
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.70 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.70 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.70 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.9  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   6.5  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    21   8.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 18  SGLHLQPNATRLDPPAPYHQND*EYGRRRDSSTGEDPD 131
           SG HLQ    RL+      Q+D + G+   ++  ED D
Sbjct: 164 SGQHLQELGLRLEDANSDEQDDGDDGQGSSTNNDEDDD 201


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 18  SGLHLQPNATRLDPPAPYHQND*EYGRRRDSSTGEDPD 131
           SG HLQ    RL+      Q+D + G+   ++  ED D
Sbjct: 164 SGQHLQELGLRLEDANSDEQDDGDDGQGSSTNNDEDDD 201


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 18  SGLHLQPNATRLDPPAPYHQND*EYGRRRDSSTGEDPD 131
           SG HLQ    RL+      Q+D + G+   ++  ED D
Sbjct: 164 SGQHLQELGLRLEDANSDEQDDGDDGQGSSTNNDEDDD 201


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 370 STLHRRLLSSWASNALVKSSKLAKMSPILRWATKWWLS-PSTALGP 504
           S +H++   ++ +N       LAK+   + + T +++    T  GP
Sbjct: 101 SFMHKKSFKNFVNNVAALDETLAKLGQYINYETDYYVCLAMTITGP 146


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
 Frame = +3

Query: 120 EDPDRKWCY*NTARGNARKIYRGEKG*DPTAQGNARRSTYRLR-GSKTVKI----LKKPE 284
           ++PD KW   ++++   R  YR     D   +   R   +R   GS+  K+    +  P+
Sbjct: 223 DEPDHKWKKNDSSKKKTRYYYRSV---DDVIEKGKRPGAFRTTLGSELSKVKVIDMTGPQ 279

Query: 285 PTVGEG-EVLIRVKA-CGL-NFQDLIVRQGAIDSPPKTPF---ILGFECAGEIEQVGENV 446
             V  G   L  +KA  G+ +F+D++ ++ +  + P+      +L   C  +I ++  N 
Sbjct: 280 QRVLSGYHALSGLKAPPGVEHFEDVVHKKCSNFTLPEIQHNLDVLVDMCEQDIIRIDRN- 338

Query: 447 TNFKVGDQVVALPEYRAWAELCLYRPSTV 533
           T F   D++VAL + +   +  + R S V
Sbjct: 339 TRFN-QDKIVALRQEQETLKSQVQRESDV 366


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 428 LDFTSAFEAQDERSLRWRVDGALTNYQILEV*AAGFHAN 312
           + F+S    +  RSL     GALT + ++     G H N
Sbjct: 353 IKFSSFGMLKISRSLLTSFGGALTTFLVILFQYGGIHGN 391


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 517 TGPVPCTRCPEGMSCP 564
           T P  CT CP+  S P
Sbjct: 5   TLPCKCTICPKAFSRP 20


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,937
Number of Sequences: 336
Number of extensions: 3161
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)