Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0180
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    60   2e-10
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    52   7e-08
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    42   6e-05
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    41   1e-04
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    41   2e-04
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    39   7e-04
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    31   0.14 
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    30   0.25 
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    29   0.57 
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   4.0  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   7.0  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   9.3  

>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 28/59 (47%), Positives = 41/59 (69%)
 Frame = +3

Query: 300 GEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVV 476
           GEVL+++KA  LN++DLI+ +G    P + P + G + AG IE+VGE+V  F+ GD VV
Sbjct: 31  GEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVV 89


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
 Frame = +3

Query: 252 SKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQ 431
           S  ++++ K  P      ++I+    GLN+ D  +R G   +P   P+I G E AG +  
Sbjct: 14  SSVLQVITKEIPKPAPNGLVIKNAYAGLNYIDTYLRTGLYTAP--LPYIPGKEAAGVVAA 71

Query: 432 VGENV-TNFKVGDQVVALPEYRAWAE 506
           VG+ V  +FKVGD+VV L  + A+A+
Sbjct: 72  VGDKVEADFKVGDRVVYLTPFGAYAQ 97


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
 Frame = +3

Query: 243 LRGSKTVKILKKPEPTVGEG-EVLIRVKACGLNFQDLIV-RQGAI-DSPPKTPFILGFEC 413
           LR      I  +P  T+ +  +V + +KA G+   D+   ++G I D   K P ILG E 
Sbjct: 10  LRKKMDTAIEDRPGQTLTDDHQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHES 69

Query: 414 AGEIEQVGENVTNFKVGDQVVALPEYRAWAELCLYRPSTVYAL 542
           AG + +VG+ V++ K GD V   P       LC Y  S  Y L
Sbjct: 70  AGVVVEVGKGVSSLKPGDPVAVEP--GCVCRLCDYCRSGRYNL 110


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = +3

Query: 249 GSKTVKILKKPEPTVGEG-EVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGE 422
           G   VKI + P+PT+    +V+++  AC + +  D  +  G +    K   ILG E  G 
Sbjct: 44  GPLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGA-ILGHESCGI 102

Query: 423 IEQVGENVTNFKVGDQVV 476
           + + G+ V N ++GD+VV
Sbjct: 103 VAEKGDEVNNLEIGDRVV 120


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 25/60 (41%), Positives = 31/60 (51%)
 Frame = +3

Query: 303 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 482
           EV I++   G+   D     G  D     P ILG E AG +E VG  VT  +VGD V+AL
Sbjct: 39  EVRIKIVNSGVCHTDAYTLSGK-DPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +3

Query: 303 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 482
           EV ++V    +   D     G +D     P +LG E AG +E +GE V N + GD V+ L
Sbjct: 36  EVRVKVDWSAVCHTDAYTLSG-VDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILL 94


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 303  EVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVA 479
            EV++RVK C + + QD++ +  A+D P  T  I   E   ++  + EN    K+G  +  
Sbjct: 1055 EVVLRVKMCQMGDVQDVLGK--ALDPPSSTNIIRALEKLHQVGALSENEKLTKLGKFLSQ 1112

Query: 480  LP 485
            LP
Sbjct: 1113 LP 1114


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 465 DQVVALPEYRAWAELCLYRPSTVYALPRRNVLPWMLLPSPRTTW 596
           +++++LP+ R    + L  P TV  LPR   LP    P P T W
Sbjct: 53  NKMISLPKERTSDGVLLQLPETVTPLPRAKPLP---KPKPETKW 93


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 21/71 (29%), Positives = 29/71 (40%)
 Frame = -3

Query: 454 KLVTFSPTCSISPAHSKPKMKGVFGGESMAP*RTIKSWKFRPQAFTRIRTSPSPTVGSGF 275
           K   FSP  S+S  H K K +      +      + SW   P    R  +  SP V S +
Sbjct: 491 KNTAFSPGTSLSTNHVKTKSRSAHNNSTSPFSTAVSSW-LNP---LRYPSDKSPRVISSY 546

Query: 274 LSILTVLDPRS 242
           L  + +  PRS
Sbjct: 547 LESVFISKPRS 557


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 444 VTNFKVGDQVVALPEYRAWAELCL 515
           ++NF+ GD    +P ++ W   CL
Sbjct: 348 LSNFREGDSAKNIPTHKLWCTYCL 371


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 320 ESLRPKLPRFD-SSSGRHRLSTEDSFHL 400
           +S R  L  F  SS+ RH++STE  FH+
Sbjct: 216 QSFRGPLEPFKYSSTTRHKVSTESIFHV 243


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 421 KSSKLAKMSPILRWATKWWLS 483
           +SS L K+ P+LR+  ++WL+
Sbjct: 154 RSSHLLKVRPLLRFLIEFWLN 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,158
Number of Sequences: 5004
Number of extensions: 49018
Number of successful extensions: 145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)