Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0180
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical pr...    54   7e-08
Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical pr...    49   3e-06
Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical pr...    48   4e-06
Z82081-5|CAB04958.1|  344|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z70782-3|CAA94841.1|  347|Caenorhabditis elegans Hypothetical pr...    45   5e-05
U18781-1|AAB03374.1|  384|Caenorhabditis elegans alcohol dehydro...    37   0.011
AC006663-4|AAF39899.1|  384|Caenorhabditis elegans Hypothetical ...    37   0.011
AC006663-3|AAL32231.1|  386|Caenorhabditis elegans Hypothetical ...    37   0.011
AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical ...    36   0.033
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U10401-9|AAA19054.4|  771|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    28   4.9  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    28   4.9  
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical
           protein F39B2.3 protein.
          Length = 328

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 27/78 (34%), Positives = 43/78 (55%)
 Frame = +3

Query: 240 RLRGSKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAG 419
           R      ++ ++   P + + +VL+R  A G+N  D  +R G     P  P++ G + AG
Sbjct: 17  RFGAPDVIEAVESDMPRLEKNQVLVRNYAAGVNPVDTYIRAGQYGKLPNLPYVPGKDGAG 76

Query: 420 EIEQVGENVTNFKVGDQV 473
            +E VGE+V N KVGD+V
Sbjct: 77  FVELVGESVKNVKVGDRV 94


>Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical
           protein K12G11.3 protein.
          Length = 349

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 21/70 (30%), Positives = 42/70 (60%)
 Frame = +3

Query: 261 VKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGE 440
           +++ + P P+  + E+L++++  G+   DL V  G +      P + G E AG + Q+G+
Sbjct: 21  LEVRQVPVPSPADDEILVKIEYSGICHSDLHVWLGDLKDMSVCPLVGGHEGAGSVVQIGK 80

Query: 441 NVTNFKVGDQ 470
           NVT +++GD+
Sbjct: 81  NVTGWQLGDK 90


>Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical
           protein R04B5.6 protein.
          Length = 347

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = +3

Query: 243 LRGSKTVKILKKPEPTVGEGEVLIRVKACGLNFQDL-IVRQGAIDS-PPKTPFILGFECA 416
           L G   +++ + P    G  +VL+++   G+   D+  +  GAI S   K P +LG E +
Sbjct: 10  LYGINDLRLEQAPISKPGPRQVLVKINTVGICGSDVHFLTHGAIGSFVVKEPMVLGHESS 69

Query: 417 GEIEQVGENVTNFKVGDQVVALP 485
           G + ++G  V  FKVGD++   P
Sbjct: 70  GVVSEIGSEVKGFKVGDRIAMEP 92


>Z82081-5|CAB04958.1|  344|Caenorhabditis elegans Hypothetical
           protein W09H1.5 protein.
          Length = 344

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
 Frame = +3

Query: 255 KTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQV 434
           KTV I  KP       +VL++  A  +N  DL   QG     P  P + G E  G++  V
Sbjct: 35  KTVTIADKPSAD----QVLVQWIAAPINPADLNQIQGVYPVKPALPAVGGNEGFGKVISV 90

Query: 435 GENVTNFKVGDQVVA-LPEYRAWAELCLYRPSTVYAL 542
           G NV++ KVGD V+        W EL L++ + ++ +
Sbjct: 91  GSNVSSIKVGDHVIPDRSGLGTWRELGLHQENDLFPI 127


>Z70782-3|CAA94841.1|  347|Caenorhabditis elegans Hypothetical
           protein R04B5.5 protein.
          Length = 347

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +3

Query: 243 LRGSKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIV-RQGAIDS-PPKTPFILGFECA 416
           L G   +++ + P P  G  +VL++V   G+   D+     GAI     K P I+G E +
Sbjct: 10  LYGVDDLRLEQVPIPKPGPNQVLVKVHTVGICGSDVHYWTHGAIGPFVVKEPMIVGHETS 69

Query: 417 GEIEQVGENVTNFKVGDQVVALP 485
           G + +VG  V + KVGD++   P
Sbjct: 70  GIVSEVGNEVKHLKVGDRIAMEP 92


>U18781-1|AAB03374.1|  384|Caenorhabditis elegans alcohol
           dehydrogenase protein.
          Length = 384

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +3

Query: 390 PFILGFECAGEIEQVGENVTNFKVGDQVVAL 482
           P +LG E +G +E VGE VT F  GD VV L
Sbjct: 65  PVVLGHEGSGIVESVGEGVTGFAPGDHVVPL 95


>AC006663-4|AAF39899.1|  384|Caenorhabditis elegans Hypothetical
           protein H24K24.3a protein.
          Length = 384

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +3

Query: 390 PFILGFECAGEIEQVGENVTNFKVGDQVVAL 482
           P +LG E +G +E VGE VT F  GD VV L
Sbjct: 65  PVVLGHEGSGIVESVGEGVTGFAPGDHVVPL 95


>AC006663-3|AAL32231.1|  386|Caenorhabditis elegans Hypothetical
           protein H24K24.3b protein.
          Length = 386

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +3

Query: 390 PFILGFECAGEIEQVGENVTNFKVGDQVVAL 482
           P +LG E +G +E VGE VT F  GD VV L
Sbjct: 67  PVVLGHEGSGIVESVGEGVTGFAPGDHVVPL 97


>AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical
           protein Y50D4C.2 protein.
          Length = 554

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 390 PFILGFECAGEIEQVGENVTNFKVGDQVVAL 482
           P +LG E +G +E VG+ VT F  GD VV L
Sbjct: 238 PVVLGHEGSGIVESVGKGVTGFAPGDHVVPL 268


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 484 PSTALGPSCVCTGPVPCT---RCPEGMSCPGCCCHHHEL 591
           PSTAL  S  C+    CT    CP+GM+C   CC   +L
Sbjct: 231 PSTALQSSIGCS--TVCTIDESCPKGMTCQNNCCEERKL 267


>Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical protein
            F20G4.1 protein.
          Length = 1615

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +3

Query: 312  IRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVA 479
            I VKAC ++ + L+  +G    PP  PF L       IE   E V N K  D  +A
Sbjct: 1493 IGVKACEMSAEFLL--EGDDTRPPSNPFTLFLLMRSNIEDFLELVANKKSRDDEIA 1546


>U10401-9|AAA19054.4|  771|Caenorhabditis elegans Hypothetical
           protein T20B12.1 protein.
          Length = 771

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 461 HLKIGDIFANLLDFTSAFEAQDERSLR 381
           H+ +GDI  NL  FT A E  D+R+ R
Sbjct: 426 HVYLGDITRNLEYFTKAIELSDDRNAR 452


>U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical
           protein F31F7.2 protein.
          Length = 689

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 387 TPFILGFECAGEIEQVGENVTNFKVGDQVVALPEYRAWAEL 509
           TP I  F+   EI+ + + ++  K+G   VA+ ++  W+ +
Sbjct: 98  TPQITSFQHRAEIDFLRQVMSTMKMGSSKVAMAQFTPWSRI 138


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -3

Query: 511  HSSAQARYSGRATTWSPTLKLVT-FSPTCS-ISPAHSKPKMKGVFGGESMAP*RTIKSWK 338
            +S +  RYS  + T+SPT    +  SPT S  SP +S P       G   +P     S K
Sbjct: 1668 YSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYS-PTSPSYESGGGYSP----SSPK 1722

Query: 337  FRPQAFTRIRTSPS 296
            + P + T   TSPS
Sbjct: 1723 YSPSSPTYSPTSPS 1736


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -3

Query: 511  HSSAQARYSGRATTWSPTLKLVT-FSPTCS-ISPAHSKPKMKGVFGGESMAP*RTIKSWK 338
            +S +  RYS  + T+SPT    +  SPT S  SP +S P       G   +P     S K
Sbjct: 1675 YSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYS-PTSPSYESGGGYSP----SSPK 1729

Query: 337  FRPQAFTRIRTSPS 296
            + P + T   TSPS
Sbjct: 1730 YSPSSPTYSPTSPS 1743


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 96  RRRDSSTGEDPDRKWCY*NTARGNARKIYRGEKG 197
           +RRD+  G++   +W + N A+   R +Y+G +G
Sbjct: 241 QRRDTGEGDELVARWYFDNQAKECRRFLYKGIRG 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,850,325
Number of Sequences: 27780
Number of extensions: 296107
Number of successful extensions: 975
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)